barSeed - Barley Seed Development Database

Probe CUST_40104_PI390587928

Source Contig U35_25664

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40104_PI390587928	Hv_44K_v2	GTAGGTGCTTCATCAAAGGGTTTGATTTTTTCTTTAACACGGTACAATCGAAATAGCTAA	392	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5693.1	1509	2e-24	54 - 113	100	60 / 60	minus	ABC39733 ABC42189
JLOC1	JLOC1_3676.1	1584	8e-25	110 - 169	100	60 / 60	minus
Harvest21	ABC42189	453	3e-25	16 - 75	100	60 / 60	minus	ABC42189
Harvest35	U35_25664	467	3e-25	393 - 452	100	60 / 60	plus

Contig Sequence (467 bp)

>U35_25664 467 Hv_44K_v2
GGGGCCGATCGGAACCACCCGGCGGCGCACGTGACTGGGGAGGCGGGCCCGGAGCCCGAG
CTGCCGGAGGCTTTCCCGCCGGCGATGGTGGTGGTCGGCGGGTTCGACCCGCTGCAGGAC
TGGCAGCGGCGGTACGCCGCCATGCTGCAGAGGAAGGGGAAGGCGGTGCGGCTGGTGGAG
TTTCCGGACGCCATCCATGGCTTCTACATATTCCCGAAGCTCCCCGACGCCGGCAAGCTC
GTCAAGGACGTCAAGACCTTCATGGAAACCCACACGCCCGACCACTAATACGCTGCTTAG
TGGACTCATCTCGTCTGTGTATGCCTCGCAGCCTCGCCGGCGAGAGCTCCATCGTATCGG
ATACTTGGGAGATCTCATTTTCGGTATTGTTTGTAGGTGCTTCATCAAAGGGTTTGATTT
TTTCTTTAACACGGTACAATCGAAATAGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_25664 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None