barSeed - Barley Seed Development Database

Probe CUST_40100_PI390587928

Source Contig U35_25668

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40100_PI390587928	Hv_44K_v2	CGAGTGCGGGCTAGGTGCTTGTGATATTGCCAAGCTGTGCCTGTCTTCGCGATGGCTGCT	606	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.792	0.979	2.161	2.242	0.909	0.707
Raw	125.154	243.910	468.662	778.156	111.742	94.024

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_50349.5	782	2e-24	58 - 117	100	60 / 60	plus	ABC23373
MLOC	MLOC_50349.4	572	2e-24	58 - 117	100	60 / 60	plus	ABC23373
MLOC	MLOC_50349.1	474	2e-24	59 - 118	100	60 / 60	plus	ABC23373
MLOC	MLOC_50349.2	2208	2e-24	59 - 118	100	60 / 60	plus	ABC23373
MLOC	MLOC_50349.3	2477	2e-24	59 - 118	100	60 / 60	plus	ABC23373
MLOC	MLOC_50349.6	884	2e-24	53 - 112	100	60 / 60	plus	ABC23373
JLOC1	JLOC1_32135.7	1762	8e-25	512 - 571	100	60 / 60	plus
JLOC1	JLOC1_32135.6	1231	8e-25	512 - 571	100	60 / 60	plus
JLOC1	JLOC1_32135.5	2356	8e-25	515 - 574	100	60 / 60	plus
JLOC1	JLOC1_32135.4	2575	8e-25	515 - 574	100	60 / 60	plus
JLOC1	JLOC1_32135.3	2611	8e-25	515 - 574	100	60 / 60	plus
JLOC1	JLOC1_32135.2	2320	8e-25	515 - 574	100	60 / 60	plus
JLOC1	JLOC1_32135.1	1542	8e-25	515 - 574	100	60 / 60	plus
Harvest21	ABC26092	666	3e-25	607 - 666	100	60 / 60	plus
Harvest35	U35_25668	666	3e-25	607 - 666	100	60 / 60	plus

Contig Sequence (666 bp)

>U35_25668 666 Hv_44K_v2
GCTCTCCTCCGTCTCCCTCGCCGCCGGCGCCGCCGCCGCCGCCATGCTCCGGCTGCGAAG
CTCCATCCTCGCCCATCTCCTCTCTTCTTCTCCGGCCGCCTCTCCCGCATCCCCTCTCCA
CCGCCTCATATCCGCCGCCGCGCCCGCCATTCCCCCGAACCCTGGCAGCTTCGCCGTGGA
GGAGTACCTCGTCTCCACCTGCGGCCTCACACAAGCGCAGGCCGTCAAGGCCTCCGCCAA
GCTGTCCCACCTCAAGTCCCCCGCCAAGCCCGACGCCGTCCTCGCCTTCCTCGCCGGCCT
CGGCCTCTCCGCCGCCGACGTCGCCACCCTCGTCGCCAGGGACCCGCGGTTCCTCTGCGC
CGGCGTGGAGAGAGTCCTGGCCCCCAACGTCGCCGCGCTCACCGGCGCCGGGTTATCGCG
TTCCGACATCGCGCGCGTCCTCTCGCTCGGCCGCCCCCAATTCCGTCACAGAGCCATGGC
ATCCACTCTACACTACTACCTGCACCTCTTGGGCTCCCTTGACAACCTCCTCCGTGCGCT
CAAGTATGGATCCCTTTTCTCCTCCGACGTCGAGCGCGTGGTCAAGCCCAATGTCGCCCT
CCTGCACGAGTGCGGGCTAGGTGCTTGTGATATTGCCAAGCTGTGCCTGTCTTCGCGATG
GCTGCT

Homology of Contig U35_25668 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g12100.1	405	8e-51	protein\|mTERF family protein, expressed
Brachypodium v1_2	Bradi3g00780.1	384	7e-55
Arabidopsis v10	None