barSeed - Barley Seed Development Database

Probe CUST_40088_PI390587928

Source Contig U35_13691

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40088_PI390587928	Hv_44K_v2	CCTGCGTGATGTTGGGATTGATGTACTAGTGCCAAAGACTGAATGAAAAATCGAATTTGG	494	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71387.1	437	2e-24	128 - 187	100	60 / 60	plus	ABC00173
JLOC1	JLOC1_47445.1	315	8e-25	128 - 187	100	60 / 60	plus
Harvest21	ABC00173	576	3e-25	495 - 554	100	60 / 60	plus	ABC00173
Harvest35	U35_13691	576	3e-25	495 - 554	100	60 / 60	plus

Contig Sequence (576 bp)

>U35_13691 576 Hv_44K_v2
GACCTCCACCACTCCCAGTCCCAACACCAGCGAACCCCACCGGAGAGACCGACAGAAGCC
GCGGCGGCGTCGGCGAAGATGTCGGGGAGAGGCAAGGGCGGCAAGGGGCTGGGGAAGGGC
GGCGCCAAGCGCCACCGGAAGGTGCTCCGCGACAACATCCAGGGGATCACGAAGCCGGCG
ATCCGGCGGCTGGCGCGGCGGGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAG
ACCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACC
GAGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGGCAG
GGCCGCACCCTCTACGGCTTCGGCGGCTAGGCCGGCCCCCCTCCAGCCGGCTACCAGATT
ACTACTACAAGGCTAGTAGTATTTGTCTAGGGTTCGTGGTCTCTTCGGTGTTGTCTGCTC
TGCTCTGCTCTGTTCCTGCGTGATGTTGGGATTGATGTACTAGTGCCAAAGACTGAATGA
AAAATCGAATTTGGAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_13691 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None