barSeed - Barley Seed Development Database

Probe CUST_40082_PI390587928

Source Contig U35_13694

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40082_PI390587928	Hv_44K_v2	GTTTTTTGAGAGAATGTCACGTACGCTTTATTGATCATCAAGGATAATTGGCACTCAAAA	505	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	15.797	2.365	0.665	0.467	1.070	0.953
Raw	95.606	22.351	4.729	3.158	3.340	2.842

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_41017.1	1381	4e-23	1234 - 1290	100	57 / 57	plus
Harvest21	ABC32067	390	3e-25	318 - 377	100	60 / 60	plus	ABC32067
Harvest35	U35_13694	578	3e-25	506 - 565	100	60 / 60	plus

Contig Sequence (578 bp)

>U35_13694 578 Hv_44K_v2
GTCCCGGTGTTGGCACCGCTGCCGATCGGGTTCGCGGTGTTCATGGTGCACCTGGCCACC
ATCCCGATCACCGGGACGGGGATCAACCCGGCGAGGAGCCTCGGTGCCGCCGTCATCTAC
AACGGCGACAAGGCCTGGAGCGATCAGTGGATCTTCTGGGTGGGGCCGTTCATCGGCGCG
GCGATCGCAGCGCTCTACCACCAGACCATCCTCCGCGCGAGCGCCAGGGGCTATGGCTCC
TTCCGGAGCAACGCCTAGCTAGCTCGCCCAGCCATCCGCACCAAAACTTGGCCTCTTTCT
CCTTGGGAGTAGTAATATTTTCAGTCCACTGTGAAGTCTGCAGTGTGCCGGACCAGCCAA
AGTGAAGTGTCCATGTGTGTTTGTGCGCCAGGTTGAAGCAGTTGTAACCTGGCATGTCTA
CATTTTGGTTCAAGGTACCAATCAATAAATTCAGATGAAGAATCCAAGTGATGAGAAAGA
CAAATTCAGTTGTTTGATTGGTTTTGTTTTTTGAGAGAATGTCACGTACGCTTTATTGAT
CATCAAGGATAATTGGCACTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_13694 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g26640.1	224	2e-51	protein\|aquaporin protein, putative, expressed
Brachypodium v1_2	Bradi1g28780.1	290	9e-53
Arabidopsis v10	None