barSeed - Barley Seed Development Database

Probe CUST_40078_PI390587928

Source Contig U35_13696

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40078_PI390587928	Hv_44K_v2	AATATCATTATCTCGTCTTCCGGCTAATGGCAATACAGTATTGGGTTTGTTTGGTGAAAA	640	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_29694.1	591	2e-23	196 - 253	100	58 / 58	minus	ABC00009 ABC00020 ABC00026 ABC00030 ABC00035 ABC00037 ABC00059 ABC00117 ABC00122 ABC00131 ABC00139 ABC00140 ABC00142 ABC00153 ABC00159 ABC00160 ABC00163 ABC00172 ABC00173 ABC00174 ABC00175 ABC00180 ABC00197 ABC00202 ABC00203 ABC00234 ABC00250 ABC00316 ABC00434 ABC00488 ABC00499 ABC00500 ABC00576 ABC00659 ABC00665 ABC00695 ABC00700 ABC00724 ABC00877 ABC00980 ABC27134 ABC27412 ABC29158 ABC30671 ABC32179 ABC40319
JLOC1	JLOC1_19731.1	461	1e-23	66 - 123	100	58 / 58	minus
Harvest21	ABC00202	696	3e-25	633 - 692	100	60 / 60	plus	ABC00202
Harvest35	U35_13696	704	3e-25	641 - 700	100	60 / 60	plus

Contig Sequence (704 bp)

>U35_13696 704 Hv_44K_v2
GCGGAAAATCCAAAACAGTGGATCCCCCGGGCTTTAGAATTCGGACGAGGCCCCAATCCC
CTCCAATCTCACCCTCGGAGCAGCAGAGCCATCCAGCGAGCGTCGCCAGCCATGTCGGGC
CGCGGCAAGGGAGGCAAGGGCCTGGGAAAGGGCGGCGCGAAGCGGCACAGGAAGGTGCTG
CGAGACAACATCCAGGGGATCACGAAGCCGGCGATCCGGCGGCTGGCTCGGCGGGGCGGC
GTGAAGCGCATCTCCGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTC
GAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCACGCCCGCCGCAAGACCGTCACC
GCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTCGGAGGC
TAAGCCCTCGCGTGGTGCAGGTGCTTCGGGTGTAGTTGTGGTCAGGCGGGTCGTCGTTCT
CTGGTGTGCTGGTCATGTGTGTGCAGCTGCGTGCTGGTGCTTGTAACGAGTTCCAGATTC
TATAATATGGATGTTCATCTTGCAAAAAAAAAAAAAAAAAGTAGTATATAAAAAAAAAAA
AAATGGACTCCATAAACGTAGATTAGAATCCCCTTCTTCTAATATCATTATCTCGTCTTC
CGGCTAATGGCAATACAGTATTGGGTTTGTTTGGTGAAAAAAAA

Homology of Contig U35_13696 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None