barSeed - Barley Seed Development Database

Probe CUST_40076_PI390587928

Source Contig U35_13697

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40076_PI390587928	Hv_44K_v2	TATTCTAAGCATGGACGAGATCATAGATGAGTGCAAGACCTTCTTCTTCGCAGGGCATGA	994	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.869	2.710	1.134	0.828	0.315	0.421
Raw	149.354	349.235	118.586	148.951	18.170	26.648

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366063	1749	2e-24	1005 - 1064	100	60 / 60	plus	ABC03045 ABC03047 ABC47721
MLOC	MLOC_45012.2	1626	2e-24	894 - 953	100	60 / 60	plus	ABC03045 ABC03047 ABC47721
MLOC	MLOC_45012.3	1334	2e-24	602 - 661	100	60 / 60	plus	ABC03045 ABC03047 ABC47721
MLOC	MLOC_45012.1	1541	2e-24	793 - 852	100	60 / 60	plus	ABC03045 ABC03047 ABC47721
JLOC1	JLOC1_29211.1	1612	8e-25	798 - 857	100	60 / 60	plus
Harvest21	ABC47357	635	3e-25	525 - 584	100	60 / 60	plus
Harvest21	ABC03047	1819	3e-25	978 - 1037	100	60 / 60	plus	ABC03047
Harvest35	U35_13705	1367	3e-25	526 - 585	100	60 / 60	plus
Harvest35	U35_13697	1219	3e-25	995 - 1054	100	60 / 60	plus

Contig Sequence (1219 bp)

>U35_13697 1219 Hv_44K_v2
GCTCCCAGTCTCAACGAGCTCAAACAGCAGGTGCATCTCCCAGGGTCGCTGATATCTTCT
CCGCCACGTACCCTCCGGACATGGGTCTCCTCTGGATGGCGGCGGCGGCCGTGGCGGCGG
TGCTGGCCTCGTGGGCGTTCAACGCGCTGGTGCACCTCGTGTGGCGGCCGCGCGCCATCA
CCCGGCAGCTCCGCGCGCAGGGCGTGGGCGGGCCGGGCTACAGCTTCTTCGCCGGCAACC
TCGGCGAGATCAAGCGGCTCCTCGCCGACACCGCCGGCGCCGTGCTGGACGTCGGCGACC
ACGACTTCGTCCCCAGGGTGCAGCCGCACTTCCGCAAATGGATCCCCATCCACGGGCGCA
CGTTCCTGTACTGGTTCGGGGCCAGGCCGACCCTGTGCGTGGCCGACGTGAACGTGGTGA
AGCAGGTGCTCGCCGACCGCAGCGGGATGTACCCCAAGAACGTAGGGAACCCCCACATCG
CCCGCCTGCTCGGCAAGGGGCTTGTGCTCACCGACGGCGACGACTGGAAGCGCCACCGCA
AGGTCGTCCACCCTGCCTTCAACATGGACAAGCTCAAGATGATGACGATGACCATGTCGG
ACTGCGCTGGGTCAATGATGTCTGAGTGGAAGGCAAAGATGGAGAAGGGTGGCAACATGG
AGATTGAGCTGAGCAGGCAGTTTGAGGAGCTAACCGCAGATGTGATCTCTCACACTGCAT
TCGGGAGCAGCTACCAACAGGGAAAAAAGGTCTTCTTGGCGCAGAGGGAGCTCCAATTTC
TTGCCTTCTCCACCGTATTTAACGTGCAAATCCCAGCATTCAGGTACCTTCCAACTGAAA
AGAACCTTAAGATATGGAAGCTTGACAAGGAGGTGAGGGGCATGCTCATGAACATAATCA
AAACCCGTCTTGACACCAAAGACACCATGGGTTACGGCAACGACCTGCTCGGGCTCATGC
TGGAGGCATGCGCGCTAGAGCATGGGCAAAATCCTATTCTAAGCATGGACGAGATCATAG
ATGAGTGCAAGACCTTCTTCTTCGCAGGGCATGACACCAGCTCACACCTGCTCACATGGA
CCATGTTCTTGCTGAGCATGCACCCGGAGTGGCAGGAGAAGCTCAGAGAGGAGGTGCTGA
GAGAGTGCGGCAATGGGGCTCCCACCGGTGACATGCTCAACAAGCTTCACTTGGTCAACA
TGTTCTTGCTGGAAACTCT

Homology of Contig U35_13697 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g23570.1	520	0.0	protein\|cytochrome P450 72A1, putative, expressed
Brachypodium v1_2	Bradi1g20260.1	519	0.0
Arabidopsis v10	AT2G46950.1	572	2e-107	\| Symbols: CYP709B2 \| cytochrome P450, family 709, subfamily B, polypeptide 2 \| chr2:19289466-19291541 REVERSE LENGTH=572