barSeed - Barley Seed Development Database

Probe CUST_40075_PI390587928

Source Contig U35_49626

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40075_PI390587928	Hv_44K_v2	ACTTCATTCGTTGATTTGTGCCCCAATGTCTCTGTATCGTCAGGATTTAGCTGATGAAAT	501	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.023	1.429	1.602	0.977	0.283	0.258
Raw	5123.047	11012.807	10766.510	10820.483	1024.347	1043.874

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373247	1529	2e-24	1385 - 1444	100	60 / 60	plus	None
MLOC	MLOC_10116.1	2554	3e-22	1315 - 1373	98	58 / 59	plus	None
JLOC1	JLOC1_6597.1	1594	1e-22	1316 - 1374	98	58 / 59	plus
Harvest21	ABC51458	561	3e-25	502 - 561	100	60 / 60	plus
Harvest35	U35_49626	561	3e-25	502 - 561	100	60 / 60	plus
Harvest35	U35_4685	1289	3e-25	1161 - 1220	100	60 / 60	plus

Contig Sequence (561 bp)

>U35_49626 561 Hv_44K_v2
CCCCCAAACCGACGCGCACATCCATCCATCCGCATCGCCCCCGGCCACGGCCGAAACCCT
AGAGATCCACAACCGCCGTCGCCGAGCACGGCAAGGGCGCGGTGCTCGCCGCGCTCAACG
AGATCCAGGACCGCCACGACGCCGCCAGGGAGGTGGAGCGCAGCCTCCTCGAGCTCCACC
AGGTCTTCCTCGACATGGCCGTCGTCGTGCAGTCGCAGGGGGAGAAGCTCGACGATATCG
AGAACCAGGTGACCAACGCCAGGGACTACGTCCACTCCGGCAACAAGGAGCTCGGCAAGG
CTCGTCAGCACCAGCGCGGCAGCCGCAAGTGCCTCTGCATCGGCATCATCCTGCTGCTCC
TCCTCATCCTCATCGTCATCGTCCCCATCGCTACCAGCCTCAAGAGGTCCTGAGCAACCA
CACTACACCGGAGTTTGTGACGATCATCATCTGGACACCTGCATTTGTGTCTAATATGCT
GTTTTGATTTCGTATTCTGCTACTTCATTCGTTGATTTGTGCCCCAATGTCTCTGTATCG
TCAGGATTTAGCTGATGAAAT

Homology of Contig U35_49626 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None