barSeed - Barley Seed Development Database

Probe CUST_40052_PI390587928

Source Contig U35_22225

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40052_PI390587928	Hv_44K_v2	TTTCGGCTAATCAGTTGTCAGCCGCATGGGTCGTCATCTTATAACACCATAATCCAGCAT	758	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251445.1	2276	2e-24	861 - 920	100	60 / 60	plus	None
MLOC	MLOC_37885.2	4141	2e-24	3497 - 3556	100	60 / 60	minus	ABC12882 ABC42310
MLOC	MLOC_37885.1	3965	2e-24	3497 - 3556	100	60 / 60	minus	ABC12882 ABC42310
MLOC	MLOC_37885.4	1401	2e-24	757 - 816	100	60 / 60	minus	None
MLOC	MLOC_37885.3	2674	2e-24	2024 - 2083	100	60 / 60	minus	ABC12882 ABC42310
JLOC1	JLOC1_24577.1	2720	8e-25	613 - 672	100	60 / 60	plus
Harvest21	ABC16279	826	3e-25	759 - 818	100	60 / 60	plus
Harvest35	U35_22225	826	3e-25	759 - 818	100	60 / 60	plus

Contig Sequence (826 bp)

>U35_22225 826 Hv_44K_v2
AGCAAGCAAGAGGAACCCAACTGCGCCTCCCCCGCCTCCCGCCTCCCACGCCACACCCTA
CCATACCTAGATCCTCCACCAGGCGGCGGCCCCGTGCCCGGCCCATCTCCCCCGTTTCCT
CTTCCCCGCGCCGGCGAGTCAGGTGCTGAGACCACTTCCACCGGCCGTCCGCCATCAGAT
CAGAACCAAGGATGGCCGGCGGCGGCACCAGCATCAGGAAGTATGTGGGCGCCCTCAAGG
ACTCCACCACCGTCAGCATCGCCAAAGTGAACAGCGACTACAAGCAACTGGACATCGCCA
TCGTCAAGGCCACCAACCATGTGGAGCGGCCTGCAAAGGAGAAGTACATCAGAGATATCT
TCATGCATCTCAATTCCGGGAGGGCTCGCGCGGACGTGGCCTACTGCATCCGCGCCCTCG
CCAGACGCCTCTCCAAGACGCGCAACTGGGCGGTTGCACTCAAGACGCTAATTGTGATAC
ACCGTGCCCTTCGCGAGGTCGACCCTTCTTTCCGTGATGAGCTCATCAGTTACGGAAGAT
CTAGCGGCCAAATGCTACACATGTCCTATTTCAAAGATGACTCCAGCCCTGATGCTTGGG
ATCACTCCGCGTGGGTGCGCAATTACGCTTTGTTTTTGGAAGAGAGGCTCGAATCTTTCC
GTGTGCTGAATTATGACGTCGAACTGGATCCATTGGGAACACGAGATGTTGATACAACTG
GTTTGCTTGCACAACTGCCGGCATTGTCGCAGCTTCTTTTTCGGCTAATCAGTTGTCAGC
CGCATGGGTCGTCATCTTATAACACCATAATCCAGCATGCCCTTGC

Homology of Contig U35_22225 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g55970.1	570	7e-113	protein\|ANTH, putative, expressed
Brachypodium v1_2	Bradi3g54460.1	566	5e-120
Arabidopsis v10	AT5G35200.1	544	1e-90	ENTH/ANTH/VHS superfamily protein \| chr5:13462463-13465581 REVERSE LENGTH=544