barSeed - Barley Seed Development Database

Probe CUST_4003_PI390587928

Source Contig U35_13393

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4003_PI390587928	Hv_44K_v2	CTGCTGAGCTCGGGTGTAAGTCATTGTTGTTATGATTAATGGAAATCGATTAAAATCAAA	475	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80800.1	1091	6e-24	20 - 78	100	59 / 59	minus	ABC04526
MLOC	AK358426	1034	7e-23	978 - 1034	100	57 / 57	plus	ABC04526
JLOC1	JLOC1_53793.1	1188	3e-24	1129 - 1187	100	59 / 59	plus
Harvest35	U35_13393	549	3e-25	476 - 535	100	60 / 60	plus

Contig Sequence (549 bp)

>U35_13393 549 Hv_44K_v2
GAGCGGGTGCATCATCTGCACGGCGAGCACCGCGGGGGTGCTGGGCGGCATCGTCGGGCC
CACGTACGGCATCTCCAAGGCCGCCGTCATCGGCGCCGTGCGCGCGTTCGCCGGGGAGCT
GGGCCGCCACGGGGTGCGCGTGAACGCCATCTCGCCGCACGGCATAGCGACGCGGTTCGG
GCTGCGCGGGCTGGCGGAGCTGTTCCCGGAGGCGAGCGAGGGGGAGCTGAAGCGGATGGT
GGAGACGGGCATGAACGAGATGGGCGGCGGGACGGTGCTGGAGGTGGAGGACATCGCCAG
GGCCGCCGTGTACCTGGCGTCCGACGAGGCCAAGTATGTCAACGGGCACAACCTAGTCGT
CGACGGCGGGTGCACGGTGGGCAAGGCGGCCAACAAGCCGGCGCCGGCGGGATAAGTGCC
CATGGGCGAACGATACGTGCTTTACTCCGTACTGTTCAAGTCTGCCGTAGTAATGCTGCT
GAGCTCGGGTGTAAGTCATTGTTGTTATGATTAATGGAAATCGATTAAAATCAAAAAAAA
AAAAAAAAA

Homology of Contig U35_13393 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None