barSeed - Barley Seed Development Database

Probe CUST_40032_PI390587928

Source Contig U35_22234

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40032_PI390587928	Hv_44K_v2	AATGATCATGGATTCACGGTGCCTGGCCAGTGAAGGAAATGAGTTGGGCTTTTGTATTTC	1246	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	8.228	5.043	1.078	0.859	0.457	0.358
Raw	177.253	175.222	32.198	41.300	7.240	6.320

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63742.3	1596	2e-24	1453 - 1512	100	60 / 60	plus	ABC16154 ABC50346
MLOC	MLOC_63742.1	4729	2e-24	2203 - 2262	100	60 / 60	minus	ABC16154 ABC50346
MLOC	MLOC_63742.2	1687	2e-24	341 - 400	100	60 / 60	minus	ABC16154 ABC50346
JLOC1	JLOC1_41788.2	1534	8e-25	1286 - 1345	100	60 / 60	plus
JLOC1	JLOC1_41788.1	1496	8e-25	1248 - 1307	100	60 / 60	plus
Harvest21	ABC16154	1361	3e-25	1247 - 1306	100	60 / 60	plus	ABC16154
Harvest35	U35_22234	1361	3e-25	1247 - 1306	100	60 / 60	plus

Contig Sequence (1361 bp)

>U35_22234 1361 Hv_44K_v2
GCTGGAGCGTTACGGCCTCAACCCCGATGACTTCGAGGAAGACGCAGAGCCGGATCCCAG
GGAAGAGCGGAGGAGAGAGAGGCGGATGCGGCGGTCGGGTAGAGGGGAGGAGGAGGCCGC
TGTCGCTCCTGCCAGGCCGGTGGAGCGCCGGGAGACTCATAAGATGCTTCAGGTACTAGC
TGGGAAAGTACGCAGAAGAAAATTACTATCACCAAAAGATAGGAATGTTCGTCCGATGAT
GGAAGTTGTCCGAGGAGCAGCCTTTGACATTTTACAATCAGCTGGTGGTTCTCCTGCTTC
ACTCAAACCTGGTTTGTGGTTAGACTTGTACAGTGGTACTGGATCTGTTGGAATTGAAGC
CATGAGCCGAGGCTGTTCAGAGGCGCATTTTGTTGAGCTGGACCCTTGGGTTATTTCTGA
GGTTCTTAAACCTAATCTGGACTGTACTGGATTTCTTGATACTTCGCACATACATATGCT
TCGTGTTGAGAACTTCTTGGACAATGCTGAAAAATCTAAAGGTAGGTATCCTTCTTTTGA
TTACATTAGTGTGACACCACCGTATGTTGAGGTAAACTACAGTACACTACTCGATCAGCT
TGCAAGGTCCCCGTTGGTTGGAGAAGATTGCTTCATTCTGGTCGAGTACCCACTGAAAAC
AGATATGCCTGAGTCCTGCGGAAAGCTAATAAAGATAGCTGACAGGAAGTTTGGTAGGAC
AAACCTGCTGATATACGGGCCAACCTGGTCAGAGAAAAAGAAAGGCAGGATCCTGAGATA
ATTCGTGTAACGCCGAGTACCCATTTTGCAGATCAGTACTCTCTCTGAGGACCCAGTATA
TTCCTAGCGAAGTTGGCGATTCGATGCCACCGAGATCATCACCGGCACACGGCGATTTCC
CCCGTGAATTTCGTACCGGCGCTTACCCACCCGGCGGGCCGACGCGAAGACGCAGTCTCA
CCTAGGGGAGTAGCAAAATCCTCCCGTTATGGTTGGCATGTCGAAATCACGTAAGAGAGA
AGGCCCCTCTCCTTTCCAAGGCATCAGCATCAAGCCATTACGATGTCGCGTTTCATCAGC
ATTACCTTTGATATGCGCAATGGCCCGCGGCTCGGGGCTCCGTATGTGGTCCAGCCTGCC
CGCCTCGTGCATGCTTCAGGAGAGGGGAGGGGAGTTCATCCATTCGGCAGGCTGACCTCT
TATCTGTGTACCGTTTAGGCTGAGACGTGCTTTGATCTCTCCGTAGAATGATCATGGATT
CACGGTGCCTGGCCAGTGAAGGAAATGAGTTGGGCTTTTGTATTTCGCTGCGTGCATGCT
TGTAGCCTGTGCGCCATGCTCCCTTTTGAACCTGACGTATA

Homology of Contig U35_22234 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g52640.2	312	1e-132	protein\|expressed protein
Brachypodium v1_2	Bradi1g09450.2	313	3e-137
Arabidopsis v10	AT3G28460.1	314	1e-93	methyltransferases \| chr3:10672673-10674297 REVERSE LENGTH=314