barSeed - Barley Seed Development Database

Probe CUST_40030_PI390587928

Source Contig U35_22236

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40030_PI390587928	Hv_44K_v2	AATGTCCAGGCCAATGGTGATATCAGTTCATCAACTGTTGAGCTGTCATCATGTGCCTCT	1115	GeneList: ivory MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.024	1.079	2.004	1.557	0.470	0.381
Raw	110.076	167.202	293.853	359.851	37.491	34.024

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81975.1	3294	2e-24	2320 - 2379	100	60 / 60	minus	ABC16786
MLOC	MLOC_81974.1	3082	2e-24	2026 - 2085	100	60 / 60	minus	ABC16786
JLOC1	JLOC1_54525.1	2795	8e-25	916 - 975	100	60 / 60	plus
JLOC1	JLOC1_54524.1	2629	8e-25	1971 - 2030	100	60 / 60	minus
Harvest21	ABC16544	947	1e-24	889 - 947	100	59 / 59	plus
Harvest35	U35_22236	1175	3e-25	1116 - 1175	100	60 / 60	plus

Contig Sequence (1175 bp)

>U35_22236 1175 Hv_44K_v2
CAGGGCACTCTCGGCCTGGTGGAGGGACAAAGAACAGCTCAACATCAAAATCTGGTGCTT
TGTCGTCGGCAGCAAGTTCTTCCTTGCATAGTGCTCCCATGGCAGGTGGGAAAACAAAGT
CCCCAATCTTAATTAGCAAGAACAGGGCCACTCAGAGGATCCCTATCCGTGCATCATCAA
AGAAATAAGATTCACGGCGAGGGTGCATCACCAATCGTTTCACCTAGCAGCTCTGTGGAC
AGCATGTGCTCTGTGATTTCTGGGGTTTCAACAGCATCCACTGTAGGGAGAGCGAGTCAT
ACATCTGAGACCTTTAGTACAAGGTCATCTTCATTGTCCCCTTCCACCAGAAAGAGCAAT
GACCACCCTCCAACCACACTACCGAGGCCTCAAATTGTTGCAGAAGGACAGGCTTCAAGA
ACATTTTTTGATAATGTGAAATCCGATGTCAACACATCCACCCAAGGAAATGGTTTTAAG
CCATCTAGTTTACGAAGGCCTACACCAAAGATTGGATATTTTGATGCCGAGAAATCTGTT
GAACAAAAAGCCGGTGCACGGGCACAACTGCAGCCCACGAAGGTTCTGTTTTCACCGCTG
GCCACACAGAGCTCTTGGATTCCATCTACTCCGAAGACAATCCCTGCATCTCTTACATTT
GAGCAAGAAGAGCCAAAATCTAGGGCAGCAGCACCTTCTCAAACCAAAGCGTCGCCTTCA
CTGCCTCTCAAAGTCGCACAAAGTGAATTAAAACCATCAAAGGTTACAGAGCCTGAAGCT
TCTCAAGCTAAAGCATCAACTCCACTGCGTCTCACAGTTTCACGAATTGAAGTAAAACAA
TCAAAGTTGACCGAGCCTGAAGCTTCTCAAGCCAAGGCATCAACTCCACTGCCTATCAAA
CTTGACCGAACTGAAGTTAATCCATCAAAGGTGACAGAGCATGATGCTTCTCAAACCAAG
GCATTGGCTGCAGCAATGGAAGTAGAACTATTGGAGGTGATTGAGCATGCAGTAGAAGCA
CCAATGGTGTCGGAGCATGGAGTGCAGATGCTGGAGACTGGCCCATTGGTCGCCATGGAC
ATTGCAGAGGAGGAGGGCATTCTGGCTTTAATCAGAATGTCCAGGCCAATGGTGATATCA
GTTCATCAACTGTTGAGCTGTCATCATGTGCCTCT

Homology of Contig U35_22236 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g37840.1	887	3e-62
Arabidopsis v10	None