- Probe CUST_4002_PI390587928
- Source Contig U35_49321
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_4002_PI390587928 | Hv_44K_v2 | CCGCAACTGGTTTCATCAGAAGATTAGAAGCAATCTGTTATACATCAACATTTTTGTAAG | 63 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.032 | 2.089 | 1.241 | 0.801 | 0.331 | 0.354 |
| Raw | 945.690 | 1540.687 | 798.064 | 802.349 | 114.654 | 137.155 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK248677.1 | 3548 | 2e-24 | 3424 - 3483 | 100 | 60 / 60 | plus | ABC11876 ABC15312 |
| MLOC | MLOC_18498.1 | 864 | 2e-24 | 245 - 304 | 100 | 60 / 60 | minus | ABC15312 |
| JLOC1 | JLOC1_12802.1 | 447 | 8e-25 | 92 - 151 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC15312 | 752 | 1e-23 | 389 - 445 | 100 | 57 / 57 | plus | ABC15312 |
| Harvest35 | U35_49321 | 368 | 3e-25 | 64 - 123 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_18011 | 2040 | 3e-25 | 1679 - 1738 | 100 | 60 / 60 | plus |
Contig Sequence (368 bp)
>U35_49321 368 Hv_44K_v2 TTTTTTTTTTTTTTTTTAATCACGTAAAAACAAGGCAGGTATAATAGTACGTTGTAAAAA CAACTTACAAAAATGTTGATGTATAACAGATTGCTTCTAATCTTCTGATGAAACCAGTTG CGGCCTAAGGGTTTACTAAAGTAGAAGGTTACATCCTATGCTGTGGCAGACGATGGCTAC ATCTCCATGTCATGTCAAAGACAAATTACAAAACAGCTACATTTGCTCTGCTAACTTGTT TCAAAAAACATTTGCTCTGCTAACATATACCCCGTATGGTACAACAGCGGGAGCTCCACT GATCACAGGTACAATGAGTTGGCAAACATGATGCCCCGGCGCAAGCTCTCGCTCGCCGCT CCAAACTT
Homology of Contig U35_49321 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |