- Probe CUST_40028_PI390587928
- Source Contig U35_22238
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40028_PI390587928 | Hv_44K_v2 | TTTTTCGTTGAGCCTGGAAAAACCTTGGAATGATATCGGATATCACGTTATTGCTTCAAA | 452 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.419 | 2.436 | 1.322 | 0.633 | 0.239 | 0.223 |
| Raw | 1309.910 | 2036.866 | 970.277 | 744.243 | 97.077 | 99.738 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK372392 | 602 | 2e-23 | 466 - 523 | 100 | 58 / 58 | plus | ABC18608 |
| MLOC | MLOC_61802.2 | 433 | 2e-23 | 70 - 127 | 100 | 58 / 58 | minus | ABC18608 |
| JLOC1 | JLOC1_40406.2 | 492 | 1e-23 | 310 - 367 | 100 | 58 / 58 | plus | |
| Harvest21 | ABC18608 | 520 | 3e-25 | 449 - 508 | 100 | 60 / 60 | plus | ABC18608 |
| Harvest35 | U35_22238 | 524 | 3e-25 | 453 - 512 | 100 | 60 / 60 | plus |
Contig Sequence (524 bp)
>U35_22238 524 Hv_44K_v2 GAAATGGCATCCTTGGCCCGCGCCGCCGCCACCGCCGCGAGAGCGGCCCTCCGCCCGGCG CCCCTCGCCGGACGCGGCCTTGGCCTCGGCCTCGGCTCCTCCCTGCCGTCTCCCTCCCCC GCACGAGCCGCCCGCATCCTCCGCAGGTCGGCGGTGGCGGGGCTGGATACGCTGCTGCCC CTGCACACCGCGGTGGCGTCGGCGCGCCTCAAGTCCTGCATCGCCGTCGACTCCACCTGC TGGTGCTCCCTCTCCCAAGGTTTTAAAAAGCGCGTCTGATCATGGTTAGGAGCTGTGCAG CTGAGAAGTGAAGACACCAAGTTAAAAAGAAAGTGCATATGTTTGCTGATAGTTCTTAGA CATGTATCCCATCTATTTTGCCATTGCTCTGGATGAATGTACTCTTATAACAAAATAATG GAGTGTTGCCCCCTTTTCTCTGGGACCTTGATTTTTTCGTTGAGCCTGGAAAAACCTTGG AATGATATCGGATATCACGTTATTGCTTCAAAAAAAAAAAAAAA
Homology of Contig U35_22238 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |