barSeed - Barley Seed Development Database

Probe CUST_40026_PI390587928

Source Contig U35_34211

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40026_PI390587928	Hv_44K_v2	ATGAACGAGTTCCTTTCTCAGCCGTATGACTTCTTCTCAGATGCCACGGCACAGATTAAT	444	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248297.1	2683	2e-24	2048 - 2107	100	60 / 60	plus	ABC07184
MLOC	MLOC_53738.3	2263	2e-24	1331 - 1390	100	60 / 60	minus	ABC07184 ABC11406
MLOC	MLOC_53738.1	3720	2e-24	2316 - 2375	100	60 / 60	plus	ABC07184 ABC11406
MLOC	MLOC_53738.2	3686	2e-24	2136 - 2195	100	60 / 60	plus	ABC07184 ABC11406
JLOC1	JLOC1_34536.1	3812	8e-25	2123 - 2182	100	60 / 60	plus
Harvest21	ABC07184	2611	3e-25	1976 - 2035	100	60 / 60	plus	ABC07184
Harvest35	U35_34211	562	3e-25	445 - 504	100	60 / 60	plus
Harvest35	U35_17079	2600	3e-25	1976 - 2035	100	60 / 60	plus

Contig Sequence (562 bp)

>U35_34211 562 Hv_44K_v2
TATAGGGCGAATTGGGCCTTCAGATAGAGGCTCGAGCGGCCGCTAGTCTGCTGTAGCACA
AGCAAAGATAGCAAACCAGCTTTACCTCAAGAAATTCTCTGGCCCGAGGTGGGCGGCTTT
GGTGAAGAAGGGAGCTAAGAAGCAGAGGTTGTTGTGGGCATCCACCAGCGTGAAGAACCC
GGCTTACTCTGACACACTTTACGTCGATCCTCTCATCGGACCTGACACTGTGCCGTGGTC
GATGAATGCGTCCAGCGGCCGCTCGACGAAGAAGTGAAAGACGCCGCGCCTTCGTCCCTT
GCAGATATCAAGAAGTTTGCGGATGCCGTTTCTGTCAGCATCAAGTCTGTTTACCCAGAG
ACGAGCAATTTCTTGACAAACCAGACGAATCCTCTTGTCAAGTCCCTGCAGTCTGCTGGC
CTTCCAGTCTATGTCTATCTGCTGATGAACGAGTTCCTTTCTCAGCCGTATGACTTCTTC
TCAGATGCCACGGCACAGATTAATGCCCTTGTGCACAAAGGTGTAGAGGGAGGGGGAGTG
GATGGACTCATCACCGATTTCC

Homology of Contig U35_34211 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None