barSeed - Barley Seed Development Database

Probe CUST_4001_PI390587928

Source Contig U35_49322

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4001_PI390587928	Hv_44K_v2	ATGATGGCCTGTTCTCGTTCGAGTAGGGATGGATGGAGGATGGTGTATATTGAATTTTTT	60	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.519	2.016	1.614	0.822	0.235	0.278
Raw	4341.260	8792.907	6248.123	5065.807	495.115	646.615

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38381.5	3305	2e-24	3226 - 3285	100	60 / 60	plus	None
MLOC	MLOC_38381.2	3402	2e-24	3310 - 3369	100	60 / 60	plus	None
MLOC	MLOC_38381.3	3403	2e-24	3311 - 3370	100	60 / 60	plus	None
MLOC	MLOC_38381.1	3374	2e-24	3235 - 3294	100	60 / 60	plus	None
JLOC1	JLOC1_24950.1	3333	8e-25	3230 - 3289	100	60 / 60	plus
Harvest35	U35_49322	349	3e-25	61 - 120	100	60 / 60	minus

Contig Sequence (349 bp)

>U35_49322 349 Hv_44K_v2
TTTTTTTTTTTTTTTTTAGCCAAATGATTACTTTTCCAGAGCCTTTTATAACCTCTCCCA
AAAAAATTCAATATACACCATCCTCCATCCATCCCTACTCGAACGAGAACAGGCCATCAT
GTCCGGAGCATGGACACGACGAAATCTAGGCTCGTTTCCCCTCACCGGCAAGGCAATGGC
CGGCCCGATGGAGCTCGTCACCAGAGCTGAGCCCTCTCCCTGATCATGTTGGAAATGGGG
TGCCAGCCCGTGAGCCACGGCTTCTTGGCCGCCGGCGACGCGAAGTTGAGCTCGAACATC
TCCTTGCTGACGTTGCCGCCCTCGCAGAAGCCCACCAGCCGGGCCACGA

Homology of Contig U35_49322 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None