- Probe CUST_40018_PI390587928
- Source Contig U35_10266
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40018_PI390587928 | Hv_44K_v2 | TCAGGTTAGATCATCACGGCCTACTGATTTTGCTAAATATTTTCGAATGATCGTATGAAA | 511 | GeneList: darkolivegreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.162 | 0.416 | 0.711 | 1.219 | 1.501 | 1.722 |
| Raw | 9.661 | 35.873 | 57.866 | 148.297 | 63.968 | 80.073 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK366669 | 1818 | 2e-24 | 1746 - 1805 | 100 | 60 / 60 | plus | ABC43795 |
| MLOC | MLOC_24089.2 | 1084 | 2e-24 | 150 - 209 | 100 | 60 / 60 | minus | ABC43795 |
| JLOC1 | JLOC1_16589.1 | 1039 | 8e-25 | 106 - 165 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_10266 | 601 | 3e-25 | 512 - 571 | 100 | 60 / 60 | plus |
Contig Sequence (601 bp)
>U35_10266 601 Hv_44K_v2 GGTGTGTGGTGCCCAAATTTGGGTGAAAAGCAAGGAGGTGGGGATGTGAAGTCGTGCTCG GAATGGGGCGACATTAACGTTGTCAGGCCTGGGCGTGCTGGAGAGCAGTTGAGGCGCTTC ATATCTAAGATCATTCATATAAGAGGATGCACGGTCGCAGCAGCTAACTGAAAACCGAAC CCGTCAGAAGTCTGGAATTCTTTGGCAAGAGGCCAATTAACCAAGAATTTGAGGAACACA TTCTTCGCTGGAGGTAAAGCACGTGCTGCTGTAGTCGACAGTACAACGAGGCTGCATAAT ACCACTAACGCTCCTTCTACACGAACTAGGTACAAGTATAGATATATACTGTATAAAGGT GTAACTGATTTGCCCTTTTTTTTAAACATATGGATAGGACATAGAATAGATTACACTGCA GTAGCTATAGTAAAAAAAAAGGTTGCACTGCACTAGTCACTTGTCAGATAAGTATATATA CACAGTGGTTATAAAGTGGCGGCTTGAGTGGTCAGGTTAGATCATCACGGCCTACTGATT TTGCTAAATATTTTCGAATGATCGTATGAAACTTAAATTCCTAGAAAAAAAAAAAAAAAA A
Homology of Contig U35_10266 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |