- Probe CUST_40015_PI390587928
- Source Contig U35_22240
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_40015_PI390587928 | Hv_44K_v2 | GATGTACCGCCTCTTTGTTTTCTTAAGTTTTGCGAGTCGTTATTATAGTAAAAAGAAGCT | 462 | GeneList: tan MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.097 | 0.367 | 2.825 | 2.493 | 0.945 | 1.074 |
Raw | 4.887 | 37.660 | 247.767 | 340.996 | 45.321 | 55.165 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK359460 | 1282 | 2e-24 | 1100 - 1159 | 100 | 60 / 60 | plus | ABC16714 |
MLOC | AK372846 | 1251 | 2e-24 | 1183 - 1242 | 100 | 60 / 60 | plus | ABC16714 |
Harvest21 | ABC16714 | 549 | 3e-25 | 463 - 522 | 100 | 60 / 60 | plus | ABC16714 |
Harvest35 | U35_22240 | 549 | 3e-25 | 463 - 522 | 100 | 60 / 60 | plus |
Contig Sequence (549 bp)
>U35_22240 549 Hv_44K_v2 GCCTTCCCACCATCGGATGCGCAGGCAAGAATGTTGCGGGCGACGGCGCGGCGACGTAGC CTATTCAGCCTGGGCATGTCGCTGGCGGTGGGCGGGATCGCGTGGTCCGCGGACAAGCCA TGCCTGCCGCTACTCGCGGGGCTCGTCGCCGTGGTGGCCATGTCAATGTGCAGCGTGTCG CGCCTCTTCCGCGCGCCCGCGGACCGCCGCGGCCTGCCTCCGGCGTCCGCCGCTTCCGAC GGCGCCGTCGCGCTGCTGAGCCTCAACTGGTTCCTGCTGGGAGTGCTCACATACCCGATG CTCCCGGGCGTGGCGCGCGCCGTCGTCCCGCGCGCCGCTCGCCTCGCCGGGCCCGCCATC GCGTGGGTCGCCGCGGCGCTCCCCGCTCCCGTGTGAGAGAAGTGGCACTTTCTGAGTGCC ATCTGTGTATCCGCGTGTCTTGTTGCTTGAGCTTGTGTGGGTGATGTACCGCCTCTTTGT TTTCTTAAGTTTTGCGAGTCGTTATTATAGTAAAAAGAAGCTTTATTCTCCTAAAAAAAA AAAAAAAAA
Homology of Contig U35_22240 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |