barSeed - Barley Seed Development Database

Probe CUST_40011_PI390587928

Source Contig U35_22244

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40011_PI390587928	Hv_44K_v2	AAAGTCGGATTTGAGATTCAGAGGTCGATGTAAGTAAGTCAAGGGATCCAAGAAACGTCC	625	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66546.1	1953	2e-24	1788 - 1847	100	60 / 60	plus	ABC15334 ABC15335
MLOC	MLOC_66546.2	1956	2e-24	1791 - 1850	100	60 / 60	plus	ABC15334 ABC15335
JLOC1	JLOC1_43865.3	1887	8e-25	1714 - 1773	100	60 / 60	plus
JLOC1	JLOC1_43865.2	2559	8e-25	2386 - 2445	100	60 / 60	plus
JLOC1	JLOC1_43865.1	1940	8e-25	1767 - 1826	100	60 / 60	plus
Harvest21	ABC15334	619	3e-25	517 - 576	100	60 / 60	plus	ABC15334
Harvest35	U35_22244	728	3e-25	626 - 685	100	60 / 60	plus

Contig Sequence (728 bp)

>U35_22244 728 Hv_44K_v2
TGCCGTACTCGTTCGAGGGGATTGTGAGGGGGAGGAGGACCGGCGGCGGCGTGGAGAAGG
TGGTGGAGAGGAGGCAGAGGAGGATGATCAAGAACAGGGAGTCCGCCGCCAGGTCCCGCG
CCCGCAAGCAGGCTTATACAATGGAGTTGGAGGCTGAGGTTCAGAAGCTCAAGGATCTGA
ACGAGGAACTGGTGAAGAAACAGACCGAGATACTGAAAATGCAGAAAAGAGAGGCCCCTG
AAATGAAGGACCAGTTTGGACGGAAGAAGAGGCAGTGCTTGCGAAGAACGCTGACCGGGC
CCTGGTGAGGATCAAGGAGTCAACATCGACATTCCGCCGGTCTACCTGCTTTGTACATAT
AATTTGCTCTATTGTAAACCGATGATGGACCAGACCTGTGCTTGATTGACCTTCTAGTTT
CCTTTCTCGTGCTGCTTCAGAGACCGCTGACCTGTAGGCTAGTGTGTAGTCGAGGAGGGG
AGCCGTAAGTAAGAACCGCTGTAATTTGGCAGTTGTCCTTCAGAATCTAGTGTGTAGAGC
TTGTCTGGGTTTGCATAACATTAGCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAAC
TTTGTCCTTATTAGAGATTTAAGATAAAGTCGGATTTGAGATTCAGAGGTCGATGTAAGT
AAGTCAAGGGATCCAAGAAACGTCCTGCACCCGGCTTCATGTTTGGCTTANAAAAAAAAA
AAAAAAAA

Homology of Contig U35_22244 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None