- Probe CUST_40006_PI390587928
- Source Contig U35_22249
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40006_PI390587928 | Hv_44K_v2 | TTGGAATCGCGGCAACAAACTATAATGAATCTGTAACAGAGATGATCTTGGAAGCGGCCG | 660 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.594 | 1.523 | 1.082 | 0.786 | 0.267 | 0.309 |
| Raw | 606.438 | 899.439 | 562.916 | 646.555 | 76.923 | 96.674 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_3235.6 | 1906 | 6e-21 | 1820 - 1872 | 100 | 53 / 53 | plus | |
| JLOC1 | JLOC1_3235.5 | 1894 | 6e-21 | 1808 - 1860 | 100 | 53 / 53 | plus | |
| JLOC1 | JLOC1_3235.4 | 1864 | 6e-21 | 1778 - 1830 | 100 | 53 / 53 | plus | |
| JLOC1 | JLOC1_3235.3 | 1920 | 6e-21 | 1834 - 1886 | 100 | 53 / 53 | plus | |
| JLOC1 | JLOC1_3235.2 | 1890 | 6e-21 | 1804 - 1856 | 100 | 53 / 53 | plus | |
| JLOC1 | JLOC1_3235.1 | 1897 | 6e-21 | 1811 - 1863 | 100 | 53 / 53 | plus | |
| Harvest21 | ABC19184 | 601 | 2e-21 | 535 - 587 | 100 | 53 / 53 | plus | ABC19184 |
| Harvest35 | U35_22249 | 728 | 3e-25 | 661 - 720 | 100 | 60 / 60 | plus |
Contig Sequence (728 bp)
>U35_22249 728 Hv_44K_v2 AGTTGTTTCCTGAAGCCTCATTGTGTTTTGAACATGCTATACCAAAGATCGAAGAACAGG ATCCTCTTCTTGTGCTTGCATACTTTAGTGCAGGTCTTTCACGTAAAAGTCAGGGCGATA AGGAGACGGCAATCAAGCTCCTGCAAAGACTAACACAGCTCAAGGAACCAGAACAAATGA TGAACAAAGCGTGCTATTTCAAAGGCTTTATTGCTCTAGGAAGTATACTATTGAATGAAG GTCGGAAATCCGAGGCTGCAAAATACCTGCAAGTGGCTATTGCTTATGATCCTGGTGTTG AGAGATTTTTGAAGGAGTGTGAGGAAGCAATGGAAGATCAATCAAGTCAGCAGAGCACTG AGCCACCAGACCTTAAAGGACCATAAGACACAGTACAATATACTGTTCACAAGTTTTGCT CGGCAGTTTAACTGCGTTTTCCTACTCGGCATGTTCAGTTTCATCCTTGTAGTACATTTA GAAGATGTTTGAAATCAGATAGCGGCGATGGTCTAATATACCCTGAATCGCTTGGAAGTA TTGGGATAATATAGGCGCTTCAAACTTTGTAGGGTAACTATACGCGGCACAGATGTAGCC AACGATTGTGTTATTATGATACTAGACATTATGGTGTTATATAGTTTTGCGTGGATGGTC TTGGAATCGCGGCAACAAACTATAATGAATCTGTAACAGAGATGATCTTGGAAGCGGCCG CTCGAGCA
Homology of Contig U35_22249 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi1g48120.3 | 471 | 8e-51 | |
| Arabidopsis v10 | None |