barSeed - Barley Seed Development Database

Probe CUST_40004_PI390587928

Source Contig U35_34221

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40004_PI390587928	Hv_44K_v2	AGGATTCAGAGTTTCAGATCATCGGTATGACTAGTACAACGAGATATCATGCTACTATAT	343	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12952.1	4500	2e-24	3098 - 3157	100	60 / 60	plus	None
JLOC1	JLOC1_8732.1	1449	8e-25	1139 - 1198	100	60 / 60	minus
Harvest35	U35_34221	406	3e-25	344 - 403	100	60 / 60	plus

Contig Sequence (406 bp)

>U35_34221 406 Hv_44K_v2
TCACACGGATTTCTTGTGCCGCTAGAGCGAGTATATGCCACCAGGCTCAGCTATCACGGA
AGTGATAATCGCTGGCCTTGGAAACTAAATAGCAGTTGTATGTGCTATTCATTCTGATGC
TATTAAGAGGGAAATGTATGTGCTCAATTTTAGCTTTGCACTTCCGCTTTGTTGCATCAA
TGTAAGGAAAGTTCAGAAGCGATTCTGAATTCAGATAAACTAGACTGAGTTTCAGATCAT
ATTAAGGTATTGCTGCATTGTCGGCAAAAAAAAAAAAGAAGGTATTGCTGCATTGCATTG
GCCCTGGAATCTTGGCAAGTACAGTGTAAGCAGCTAATACCGTAGGATTCAGAGTTTCAG
ATCATCGGTATGACTAGTACAACGAGATATCATGCTACTATATTTC

Homology of Contig U35_34221 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None