- Probe CUST_40001_PI390587928
- Source Contig U35_34224
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40001_PI390587928 | Hv_44K_v2 | GATGTAGGAAGTGCAACCTTTGGGGGTAGAAAATATCTGCGTAATCTTTTATGTAAAAAA | 131 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.394 | 1.967 | 1.422 | 0.939 | 0.377 | 0.342 |
| Raw | 1921.467 | 4369.691 | 2672.677 | 2761.863 | 391.654 | 382.304 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_77923.3 | 1733 | 2e-24 | 1356 - 1415 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_51938.1 | 1775 | 8e-25 | 1490 - 1549 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_34224 | 244 | 3e-25 | 132 - 191 | 100 | 60 / 60 | plus |
Contig Sequence (244 bp)
>U35_34224 244 Hv_44K_v2 TGGCGGCGCAGTCGGAGCTGGATACTGCGTACAGAAGACCAACTGCTGTGCCGCTCAGCT GCTGTCCAAGGCTTCGTTAGATCTGTGTAGATGCTTCTCTTTCTTTTTAGGAACTGCAGC CTTCCTTTTCAGATGTAGGAAGTGCAACCTTTGGGGGTAGAAAATATCTGCGTAATCTTT TATGTAAAAAAAAGAATCTTCTGTAATGTTTGGATCTGCATCCCTGATTGCTCTAAAAAA AAAA
Homology of Contig U35_34224 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |