barSeed - Barley Seed Development Database

Probe CUST_3_PI390587928

Source Contig U35_7868

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3_PI390587928	Hv_44K_v2	GATTGTAATCAGGAGATGCGTGATTGTGTAATGTACCATGGAGTTTACAGAAATATTCTT	1190	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.134	1.641	1.374	0.858	0.376	0.442
Raw	243.973	552.977	401.207	402.635	61.393	77.392

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51570.8	3169	2e-24	3086 - 3145	100	60 / 60	plus	ABC19830 ABC20810
MLOC	MLOC_51570.4	2712	2e-24	2619 - 2678	100	60 / 60	plus	ABC19830 ABC20810
MLOC	MLOC_51570.2	2739	2e-24	2658 - 2717	100	60 / 60	plus	ABC19830 ABC20810
MLOC	MLOC_51570.9	2597	2e-24	2510 - 2569	100	60 / 60	plus	ABC19830 ABC20810
MLOC	MLOC_51570.1	2851	2e-24	2723 - 2782	100	60 / 60	plus	ABC19830 ABC20810
MLOC	MLOC_51570.6	2938	2e-24	2841 - 2900	100	60 / 60	plus	ABC19830 ABC20810
MLOC	MLOC_51570.7	2937	2e-24	2840 - 2899	100	60 / 60	plus	ABC19830 ABC20810
JLOC1	JLOC1_32955.5	2501	8e-25	2414 - 2473	100	60 / 60	plus
JLOC1	JLOC1_32955.3	2664	8e-25	2577 - 2636	100	60 / 60	plus
JLOC1	JLOC1_32955.2	2590	8e-25	2503 - 2562	100	60 / 60	plus
JLOC1	JLOC1_32955.1	2711	8e-25	2624 - 2683	100	60 / 60	plus
Harvest21	ABC20810	698	3e-25	32 - 91	100	60 / 60	minus	ABC20810
Harvest35	U35_7868	1292	3e-25	1191 - 1250	100	60 / 60	plus

Contig Sequence (1292 bp)

>U35_7868 1292 Hv_44K_v2
AGGAGTACCCAAGTTGCTTCGCTCATAGCTGGAAGGAGACACTGTCAGGACTTCAGTAAC
ATTGTGGCAAGCTATCCGCACTACACTGTCTATAAGGGAACTTTATCAAGTGGAGTTGAG
ATAGCAGTTGTATCAACTGTGCTTGCGTCCAGCAAAGATTGGTCAAAGCATTCTGAGGGG
AGATTCCGGAAAAAGATAGACTCGCTCTCACGAATTATTTATAAGAACTTCATCAACTTG
CTTGGATACTGTGAGGAGGAGGAGCCTTTCATGAGGATGATGGTGTTAGAATACGCAGGC
AATGGGACACTCTATGAGCATCTCCATGTTGAGGGATTTGATCATATTGATTGGAATGGT
AGGATGAGAGTAATTATGGGAGTAGCATACTGCATGCAACACATGCATGAGCTCAACCCT
TGTATAACACACCCTGACCTACAGTCAAGTGCCATATTGTTATCTGAGGATGGAGCTGCA
AAGATAGCCGACATGAGTGTTTGGCAAGAAGTAATTTCCAAAGAAAAGATGCCCAGGAAT
GACGACTCCAGTGAGCACCATGAGCCAATACGTACTGATCCAGCTGGGAATGTATGTAGT
TTTGGTCTACTCATGCTGGAAATCATATCGGGAAAGCCTCCATATTCTGAACACACGGGG
CTCTCTTGCGAACTTAGCTATGGAGTGCATTAAGGATGACCGGAGCATATCCTGCTTGCT
TGACCCTACCTTGACGACTCACAAAGAAAACGATCTAGATACCATTTGTGAGTTGATTGA
GGATTGCATCCAAAGTGATCCAAAAAAGAGACCAAGTATGAGAGAGGTCGCCACTAAACT
AAGGGAAGTGCTAGCGATTTCACCGGAGGCAGCAACGCCGAGATTATCTCCGCTTTGGTG
GGCAGAGCTTGAGATACTTTCAGTTGAAGCAACCTAGGAAGAAACATGTTGATACGGTAT
GGTTCTTGCTGCAACACTGAGGTTCTGTGCATACTGTCTTGCAACCTTGTACATCTTTGT
TGCGAGTTTCTGCTTTTCTGGTGATTTCGGTGTATGCCTGTGCTACCTCCTCCCCCGCCC
CATAAATTCAAAAATTCTGGGTAATTCTTGTTTCTTCTTGAGTTTTCTCTATATGCTGAA
CGTACATGGTGATGTTGTGAATGTAGAATGATTCAGGTCATCCTAGAGTGGATTGTAATC
AGGAGATGCGTGATTGTGTAATGTACCATGGAGTTTACAGAAATATTCTTTATTTTTTTA
AAGGAAGAGACATCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_7868 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g48390.2	648	2e-127	protein\|expressed protein
Brachypodium v1_2	Bradi2g46370.1	657	3e-153
Arabidopsis v10	AT5G45840.2	706	1e-86	Leucine-rich repeat protein kinase family protein \| chr5:18594080-18597221 REVERSE LENGTH=706