- Probe CUST_39_PI390587928
- Source Contig U35_7832
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_39_PI390587928 | Hv_44K_v2 | GCGGCCCAACAGGCAGCCCCCACGCGCACGTCATCATAAAAATAAAATAAAAGAGCAACT | 33 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.690 | 2.762 | 1.462 | 0.673 | 0.701 | 0.586 |
| Raw | 127.043 | 121.224 | 67.757 | 46.796 | 17.598 | 16.650 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_20017.1 | 1419 | 2e-24 | 1189 - 1248 | 100 | 60 / 60 | minus | ABC41270 |
| JLOC1 | JLOC1_13882.2 | 1567 | 8e-25 | 136 - 195 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC20497 | 726 | 3e-25 | 34 - 93 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_7832 | 482 | 3e-25 | 34 - 93 | 100 | 60 / 60 | plus |
Contig Sequence (482 bp)
>U35_7832 482 Hv_44K_v2 CTCGCGTGACGCCAACGTATCCCTCCTACTCCAGCGGCCCAACAGGCAGCCCCCACGCGC ACGTCATCATAAAAATAAAATAAAAGAGCAACTCGCCGCCGACGCCGCCGCCGCCGCCGG TCCTAGGGTTACCGGTGCCTCGCGGCTCCTCCGGACGGCCCTCCGTCGCCGCGCTGCCCT CCCTGTTGGTACGCCGCACCTTCAGCCGGGACCCCTCCCGCGCCGCCGGCTGGAGCTGCT CCGCGACGCCGACCGGAGCAGATTGGGGAGCTGAGATCGGCATGGCGTGGTCGGCGAATC TGGAGACGATGGAGCTGGAGATCCTGGGCATGAACTTCGGCTGCGTCCTCTCGGCGCTGG CGGACGCCAAGATCCCGGAGAAACAGTGCCTGCTCCCGCTCGTCTCCAAGCTCCTCGGCT ACTGCATCGTTGCCGCCTCCACCACCGTCAAGCTCCCGCAGATACTAAAGATTTTGAAGC AT
Homology of Contig U35_7832 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |