barSeed - Barley Seed Development Database

Probe CUST_399_PI415269222

Source Contig TA43784_4513

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_399_PI415269222	Hv_44K_v2	CGAAAAATCATCGAGCATAAATGGCAATGGATTTGATCGGATCTGATATGAGGTTTCAAG	838	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.861	3.865	2.351	0.535	0.120	0.116
Raw	21491.270	43669.600	23108.667	8111.937	635.380	687.201

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_45593.1	1077	4e-23	937 - 996	98	59 / 60	plus
Harvest35	U35_6171	905	3e-25	829 - 888	100	60 / 60	plus

Contig Sequence (898 bp)

>TA43784_4513 898 Hv_44K_v2
CGGCACGAGGCACCATCACCACACCACCTGCCTCCTCCCTCCAGCTCGCCACCTCACACC
GCCGTCGATCCACCCATCCCGGCCTCCTCCGATGGCGTCCAGGCCGCTCCTCCTCCCCTG
CTCCCTCGTCGCCGTCCTCGTCCTCGCCCTCGCGGCCGGCTCCGAGGCGAGGGACCACGT
CGTTGGCGGCGGGGCCAACGGCGCGTGGAAGGTGCCGCCCCCGGCGCAGCACGAGGCGCT
CAACGAGTGGGCGCAGAAAACCCGCTTCCACGTCGGCGACAACCTCGTGTTCAAGTTCGA
CGCGGCGGCGGACTCGGTGCTGGAGGTGACCCGGGCCGACTACGACCGGTGCAACACGGC
CAGCCCCATCGTCACCTACAAGGCCAGCGCCGCCACCGTGCCGCTGCCGCCCAAGGGCGA
GCGCTTCCGCCACTTCATCAGCGGCGCGCCCGGCAATTGCCAGAAGGGCGAGCGCGTCAT
CGTCCTCGTCATGTCCGAGAACCACGGACGCCGGGTCGTGCCGCCTGCCGCGCCGGCACC
CGCTCACTCCCCATCGTCCTCCTCCGAGGGGCTCGTGGAGGCGCCCGCCCACGCGCCCGC
GCCGGCTCCGACCACCGGCGCCGCGTGGAGGACGGCGTCCAGCGGCGGCTCCGTCGTCCT
CGGCGCTCTCCTCGGAGCTCTGCTCGTCGTTGGGTTCTGAGCAGGTTCCTGTCGTTGTTT
TAGGAGCTTAGGGTGGATTCTTTGATTAGGCTCTAGTTCATTTGGACGTTATTAAGATTA
GAGGACAGACAGATGTGCTTCTTCTGTCTGTAGAAGAAGAAGATATTTTCTTTCCGCGCG
AAAAATCATCGAGCATAAATGGCAATGGATTTGATCGGATCTGATATGAGGTTTCAAG

Homology of Contig TA43784_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None