barSeed - Barley Seed Development Database

Probe CUST_3999_PI390587928

Source Contig U35_49324

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3999_PI390587928	Hv_44K_v2	CTTTTTGCCTTGAGTTGGACTACTGTACTAAATAAAGCAGTGTGTTGTCGTTGCAAAAAA	11	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.642	0.536	0.783	1.903	2.262	2.879
Raw	3.418	3.961	8.078	27.102	13.066	18.131

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369864	3639	3e-21	3586 - 3639	100	54 / 54	plus	None
Harvest35	U35_49324	395	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (395 bp)

>U35_49324 395 Hv_44K_v2
TTTTTTTTTTTTTTTTTGCAACGACAACACACTGCTTTATTTAGTACAGTAGTCCAACTC
AAGGCAAAAAGCTACGTACAACAGTTGTATACATCACATTGCAACACATATAGGCAGCAA
TTATACGACACAAAAAACCATGGAGGCCTCGTTGTTACGCGTCGTGGCCATGACCATTGC
ACGCACCTGCCGCCGTTACCGGAGGCTGCGACGACGGCGCGTCGATCTCTCTGAGCACGG
CGACCACATGTAGCATGTTAGGCCGCTTGGACGGGAAGTCGTCCACGCACTGCAGCGCCA
TCTCCAGGAACCTCATCATCTGCGCCTCCTCGTCGCCGGCCGCGGCCGCGACGAGCTCCG
GGTCCACGACCTCCTTCCCGGCGCCTTCCCTGACC

Homology of Contig U35_49324 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None