barSeed - Barley Seed Development Database

Probe CUST_39998_PI390587928

Source Contig U35_10270

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39998_PI390587928	Hv_44K_v2	TGTTCATGGCATGGTGTTAAATGCTCAGGAAACCAGTCACACATATCTGAGTTGAGGGTG	430	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55137.1	2524	2e-24	438 - 497	100	60 / 60	plus	ABC18671
MLOC	MLOC_55137.3	2204	2e-24	1852 - 1911	100	60 / 60	minus	ABC18671
MLOC	MLOC_55137.2	2195	2e-24	1852 - 1911	100	60 / 60	minus	ABC18671
JLOC1	JLOC1_35550.2	2647	8e-25	554 - 613	100	60 / 60	plus
JLOC1	JLOC1_35550.1	2561	8e-25	468 - 527	100	60 / 60	plus
Harvest21	ABC19339	575	3e-25	431 - 490	100	60 / 60	plus
Harvest35	U35_10270	576	3e-25	431 - 490	100	60 / 60	plus

Contig Sequence (576 bp)

>U35_10270 576 Hv_44K_v2
GTCGTCTGCTCTCCCCCGTCCCTCTCTCTCTCTCCCAAGACCCGGCGGGAAGTCCTCCCT
CCCGTGCCCGGCGTCTCCAGGGTCCGGTGACGAGGGAGCGGCCACCGGAGCGTCCCAGGC
CAGCTGCTCGCGCGCATTCCACCGGGGCTCCGCCCGCCCGCCCGGCGAGCGCCGTCGAGA
GGTTTGGTTGCTTGTCTGCTGTAAACAAATGAAGGTGCTGCTGATTTAGTTCTCTCGTTC
GGCGACTCATCAGATGGATCATCTCAGTCTTAGTGGCCTTTTCCGTCTTCTGCTCTCGCT
ACATCTGTTATTATCATTATTCAACCCTCTGGCAGTAGCAGATTTGGCCTCTGAGAGCCA
GGCCCTTCTTGACTTCGCCTCTGCAGTCTACCGCGGCAACAAGCTTAACTGGGGTCAAGG
TACACCACCGTGTTCATGGCATGGTGTTAAATGCTCAGGAAACCAGTCACACATATCTGA
GTTGAGGGTGCCAGGTGCTGGCCTCATCGGAGCAATCCCTCCAAAGACTCTTGGCAAGCT
CGATTCTCTCCAAGTTCTGAGCCTGCGATCCAACCT

Homology of Contig U35_10270 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None