barSeed - Barley Seed Development Database

Probe CUST_39995_PI390587928

Source Contig U35_46201

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39995_PI390587928	Hv_44K_v2	AGAAAGTGGATGTACTCATATCCCGAGTTTGGAGATCATTGCAAAGGGGTATCATGATTG	408	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251786.1	1861	3e-21	691 - 750	97	58 / 60	plus	ABC24531
MLOC	MLOC_5100.1	2016	3e-21	483 - 542	97	58 / 60	plus	ABC24531
MLOC	MLOC_5100.5	1146	3e-21	2 - 61	97	58 / 60	plus	ABC24531
MLOC	MLOC_5100.4	704	3e-21	2 - 61	97	58 / 60	plus	None
MLOC	MLOC_5100.3	1761	3e-21	443 - 502	97	58 / 60	plus	ABC24531
MLOC	MLOC_5100.2	1636	3e-21	475 - 534	97	58 / 60	plus	ABC24531
JLOC1	JLOC1_3252.1	1796	2e-21	623 - 682	97	58 / 60	plus
Harvest21	ABC45937	482	3e-25	409 - 468	100	60 / 60	plus
Harvest35	U35_46201	482	3e-25	409 - 468	100	60 / 60	plus

Contig Sequence (482 bp)

>U35_46201 482 Hv_44K_v2
TGCAAGAAGGTGGAGTACACCATCAGGGCTTGGTATCTCCTCCAGTTTGATGATTTAATG
CAACTTTACTCGCTATTTGACCCGGTTAGTGGTGAGAAGAGGCTGGAACAGCAGAATCTG
ACACCCGAGGAGATCGATACTCTTGGGGGGGTGGCATGACATATCTTTTCCAGATAATGG
AAAAGAGCAACTTCAAGTTGTTATCTGATGAAGAGTATGATGTTGCGCAGTCTGGAAAAT
ATCTTTTGAACCTTCCCATCAAAGTTGATGAATCTAAGCTGGACAAGAAGTTGTTGACAA
CATACTTTAAAGAACACCCACATGATAATCTGCCTACATTTGCTGATAAGTATATTATAT
TCCGCCGTGGCGTTGGGATCGACCGTACAACTGATTACTTTGTCATGGAGAAAGTGGATG
TACTCATATCCCGAGTTTGGAGATCATTGCAAAGGGGTATCATGATTGATANGTTGTTCT
CT

Homology of Contig U35_46201 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g29550.1	511	2e-72	protein\|expressed protein
Brachypodium v1_2	Bradi4g07450.1	516	7e-75
Arabidopsis v10	AT3G19340.1	487	5e-59	Protein of unknown function (DUF3754) \| chr3:6701387-6704071 REVERSE LENGTH=487