barSeed - Barley Seed Development Database

Probe CUST_3998_PI390587928

Source Contig U35_13396

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3998_PI390587928	Hv_44K_v2	GGAAGGAGGGAGAAATTAGAGGCTTCAGAAAACATTTCCTATTTTTGCTACATATGAAAT	611	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	14.374	6.321	1.176	1.105	0.669	0.731
Raw	686.197	452.516	75.189	96.208	24.662	28.641

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16046.1	768	7e-23	25 - 84	98	59 / 60	minus	ABC24550
MLOC	MLOC_16046.2	651	7e-23	25 - 84	98	59 / 60	minus	ABC24550
Harvest21	ABC24550	714	3e-25	44 - 103	100	60 / 60	minus	ABC24550
Harvest35	U35_13396	714	3e-25	612 - 671	100	60 / 60	plus

Contig Sequence (714 bp)

>U35_13396 714 Hv_44K_v2
TTTCATCACAACACATTACCGACCACCACAAATCCGATGGCACCCGTCTCCACTCTTGGC
ATGAAGCGCTCTGCACCAAGCGACCAGGACGAGCATCCTGTCGGACGGTGCAAGGGGGCA
TCATCACATCAGGCACACAAGATCACTTCAAAGGGCAAGGAAGTAGCCAACCCTGAAGAC
CATGGTGTCCATGAAGCTAATGAGCAGAAACGACGCCGACATCTTGCCATCGACATCAAT
AAGGTGCCCCACAAAGAATATAATGACCTCGACAACCCTCTTCCCTTCGTGGCCGCTACT
GTAGGTTGTAGGTGCTCCCAGCTGCCACACTGGCTGCTCTCACTCGTTAGAAAGAAGCAG
GCGTTGGAGAACAAGATACTCGAGCTAGCGGAGCAACGCTTGCGTTGGGCCACGGAGGAC
CTAAAAGAGGAAATGGAGCTGAAGAAGATACGTTTGGAGAATGAGAAGATGCGGGTGGTG
AATAACCGACTCTTGTTGCAGGTCAAGCGCAAGGAGTTGGAGCTCAACATTGTCAGGGCG
AAAAGGATCTAGGACATTTGCATGAATCTAGGTTATTTTTCATTATGCTAGAAATCAGGG
GGAGATGAAATGGAAGGAGGGAGAAATTAGAGGCTTCAGAAAACATTTCCTATTTTTGCT
ACATATGAAATAATGTGCTACATATCTTGATTTTGACAAAAAAAAAAAAAAAAA

Homology of Contig U35_13396 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None