barSeed - Barley Seed Development Database

Probe CUST_39980_PI390587928

Source Contig U35_22253

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39980_PI390587928	Hv_44K_v2	GAGACTTAGATTGTCAGAATCAAACATGCAAAGTTGTATACAAGCTGTGACCCTGCCAAA	680	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5115.3	2096	2e-24	425 - 484	100	60 / 60	minus	None
MLOC	MLOC_5115.2	2937	2e-24	554 - 613	100	60 / 60	minus	None
MLOC	MLOC_5115.4	1780	2e-24	15 - 74	100	60 / 60	minus	None
Harvest35	U35_22253	754	3e-25	681 - 740	100	60 / 60	plus

Contig Sequence (754 bp)

>U35_22253 754 Hv_44K_v2
GATGTTGCAGAACAGATATCAACGTCAAAGACTATATACTCGAATTGCTTTGGGAAAGGC
TAAAAGGATGGACGTCGTGTGGGGTGAGACTGCTGGTGTTGAAGGCCAACTATTGCTATT
GTGTCCTGTCCTCTTTCTCTTGCAGGTCTTTGAGGGTTATGTTGGATTTCTACTTCTTCG
GACAGCTCACACAGGGATCATCCCTGAGTGGCAGGTTGTGGTGTGTGGGATCCTGCTTAT
TGCAATGGCAATTGGCAACTTTGCAAACACAGTGGACACATTGATGGTTAAGTCCAGATT
CAAAGCAAAGATGAAGAAGTCCAAGAGCAAACGGGATCTTGCCGCATGCACGTCGCCGAC
TCGCTCATCGCTGACAAATTCGGCAGCTGGAGCTTGAAATGGAGACGTTCCCGTCACATG
AACATTTTGCCCATATTCAATCAGGGGTTATCAAAATTGTAAAGTATTAGTTTTTTGGCC
ACCAGCTCCTTGTGCCGACAGTCTGTCAAAGCTCATACCCATGTAATCATCAAACAACTA
GGTTGCTGATGGTGTCAGGTTGAGGGTTACTAAGAATAAACTGTTCATGTTTGTTTATTT
CTTGCTATGGACATCAAGTGGGCTAGATGAACTTAGGACTGTAAGAGGTAGTTACTTTTT
TTCCTGGTATAGTTATTTGTGAGACTTAGATTGTCAGAATCAAACATGCAAAGTTGTATA
CAAGCTGTGACCCTGCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_22253 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g17040.1	299	1e-57
Arabidopsis v10	None