barSeed - Barley Seed Development Database

Probe CUST_39974_PI390587928

Source Contig U35_22259

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39974_PI390587928	Hv_44K_v2	GCAGAACACAGTGTTACGAATTCCCCAAAAAATAAAAATGTGCTAAGAATAACCATTGCA	1421	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.132	4.185	2.023	0.589	0.363	0.301
Raw	91.830	132.235	57.591	24.613	4.175	3.144

Probe Sequence's BLAST hits in Barley Unigene Datasets

This probe has no hits to the blast databases

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence

Contig Sequence (1497 bp)

>U35_22259 1497 Hv_44K_v2
GAGCCGGAGCGGATCTCGCCGTCCTCAGCTGCAGCTTCTTGCTCCTCTCCATCCTGTCCC
ATGGCGCGGACATGCCACTCGGCTCCTCCCTCTCACCGGCGGCCAATTCGGCCTCGTGGT
CGTCGCCGAACTCCACCTTTTCCCTATCCTTCAAGCCGTCCCCGACCTCCCCGTCGCTCT
TCGTCGCTGCGGTCACCTACACCGGCGGAGTCCCCGTCTGGTCTGCCGGCGCCGGCGCGG
CGGTGGATTCGAGGGGCTCACTCCGCCTCTCGTCCTCCGGCGATCTGCAGCTGGTCAAAG
GCTCCGGCGCCGTGCTCTGGTCGTCCGGCACGGCTGGCCGGGGCGTTGCCGCCGCTGCCC
TCCAGGACAGCGGCAACCTCGTGCTCAAGAACTCCAGGGGGCGCATCCTATGGCAGTCAT
TCGACCACCCGACGGACACCGTGGTCATGTCGCAGAGCTTCACCTCCGGCATGAACCTCA
CCTCCGGCCCCTACGTCTTCGCCGTCGACAGGTCCGGCACCCTCACGCTTAACTGGGCCA
ACGCCGGCGCCTCCCCCGTCACCTACTTCAATAAAGGCTACAACTATACCTTCACCGCCA
AGAAGACGCTCACGCTGACGATGCAGACCAACGGCATCGTCTCCCTCAACGACGGCTCCC
TCGTCAACCCCGTCCTCGTCGCCTACAGCAGCAACTACGGCGAGAGCGACGACATGCTGC
GCTTCATGCGCCTCGACTCCGACGGCAACTTCCGCGCCTACAGCTCCGCGCGGGGCAGCG
GCACCGCAACGGAGCAGTGGTCGGCGATGGCGGACCAATGCCAGGTGTTCGGCTACTGCG
GCAACATGGGCGTGTGCAGCTACAACCGCACGTCGCCGGTGTGCGGCTGCCCGTCGCGGA
ACTTCGAGCTGGTCGACGCCTCCAACCCCCGGAGCGGGTGCAAGCGCAAGACCGAGCTCC
AGGACTGCCCGGGCAACTCCACCATGCTCCAGGTCGACAACACGCAGCTCCTCACCTACC
CGCCGCAGATCGCGATCGAGCAGTTCTACGTCGGCATCACGGCATGCCGCCTCAACTGCC
TCGTCGCCACCTCCTGCGTGGGCGCCACCGCGCTTTCCGACGGCTCCGGCCTCTGCTGGC
TCAAGGTCTCCAACTTCATCAGCGCCTACCAGTCGCCGTCGCTCCCAAGCACGTCTTTCG
TCAAGGTTTGCTTCCCCGGCGAGCCCAACCCGCCCATCAGCGCCATTAACCCGTAGTCGC
CGGGGACCTCCAGCCTCCATGGATGAATTGATTTTCCTTTAAAATAATCATGCTAGTAGC
AAAGCTGCTTGGCACCCGGTGTAGAACTTTGTGGGTTCAGAGAAATAAAATATCACCCTT
TTAGTAAAAAGATAATCTGCATAGTTATTCGGATTGCTTGAGCAGAACACAGTGTTACGA
ATTCCCCAAAAAATAAAAATGTGCTAAGAATAACCATTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_22259 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g62180.1	859	0.0	protein\|lectin protein kinase family protein, putative, expressed
Brachypodium v1_2	Bradi1g02440.1	863	0.0
Arabidopsis v10	AT1G34300.1	829	3e-107	lectin protein kinase family protein \| chr1:12503450-12505939 FORWARD LENGTH=829