barSeed - Barley Seed Development Database

Probe CUST_39972_PI390587928

Source Contig U35_10280

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39972_PI390587928	Hv_44K_v2	AGCCGCCGACGGGCTTCAAGTCGTTCGCCGTGGAGGACCGCCCGGGGGAGCAGTGGGTGC	209	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374915	886	2e-24	217 - 276	100	60 / 60	plus	None
MLOC	MLOC_63270.1	881	2e-24	527 - 586	100	60 / 60	minus	None
MLOC	MLOC_63270.2	982	2e-24	598 - 657	100	60 / 60	minus	None
JLOC1	JLOC1_41432.2	1076	8e-25	289 - 348	100	60 / 60	plus
JLOC1	JLOC1_41432.1	879	8e-25	289 - 348	100	60 / 60	plus
Harvest21	ABC39586	269	3e-25	210 - 269	100	60 / 60	plus
Harvest21	ABC22983	886	3e-25	236 - 295	100	60 / 60	plus
Harvest35	U35_10563	886	3e-25	236 - 295	100	60 / 60	plus
Harvest35	U35_10280	269	3e-25	210 - 269	100	60 / 60	plus

Contig Sequence (269 bp)

>U35_10280 269 Hv_44K_v2
GCGCGCCCTCCTCCGCCGCCGCGGCGCGCTCTCCTCTCTCCTCTCCCCGGCCGCCCCCAC
GGCGCCCAGGCTGGTCCCGTCATTCTCCTCCGCCACCGCCACCGCCACCGCCACCGCCGT
CGCGCCGCTGCGCTCCACGCTCGACGAACGCCTGCTCCGCCTCCTGCGATCCGAGATCTC
CTACGCCGCCGACCGCCGCCCTCCCCACCAGCCGCCGACGGGCTTCAAGTCGTTCGCCGT
GGAGGACCGCCCGGGGGAGCAGTGGGTGC

Homology of Contig U35_10280 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None