barSeed - Barley Seed Development Database

Probe CUST_39961_PI390587928

Source Contig U35_4892

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39961_PI390587928	Hv_44K_v2	CAGATACACAGTTAGTGAATGAGACACTAAACGCTGATAATGTGTTCTCTGGCAATTCCT	900	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.400	0.583	1.812	1.651	1.477	0.914
Raw	28.618	59.595	170.117	219.426	76.314	52.448

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70865.3	1755	2e-24	976 - 1035	100	60 / 60	plus	None
MLOC	MLOC_70865.2	1875	2e-24	1013 - 1072	100	60 / 60	plus	None
MLOC	AK354434	2978	7e-23	876 - 935	98	59 / 60	plus	ABC16689
JLOC1	JLOC1_47051.1	1831	8e-25	990 - 1049	100	60 / 60	plus
Harvest21	ABC16365	768	3e-25	709 - 768	100	60 / 60	plus
Harvest35	U35_4892	960	3e-25	901 - 960	100	60 / 60	plus

Contig Sequence (960 bp)

>U35_4892 960 Hv_44K_v2
ATCTAGCTAGGTCGAAGAAAAACGTGAAGGCCCAGTAAAAATTCATCGCCATCAGCGGAG
CGGTGGTGCTCATGCTACTCATCACCTCCATTCAGTAGCACGAGGCGGCAGAGTAGGGTA
GGGCAGAGAGAGAGAGAGAGAGGGGGCGGCGGGGAGGCAGATGCGGGAGATCCCACGGGG
GGTCGCCGCAGCCGGAGGAGGAGGAAGAGGAAGCGATGGACACGCCCGATAGGCCCCGCG
CCGGCGCCGCCGCCGGATTCGAGGACTCCCCTGTCTTCAATTTTATCAACAATCTATCTC
CTATACCACCTCCTAAACCTCAAGACTCATCACATAATGTGCACCTATTCAAGTCGTCTG
ACTTGGCCCCTGTTTCTTCAATCTTTGCCTCACCACATGTCAATCCACCAAAGGAATCTA
AAATTCTGATAAGGGATGATTCTGTTCAACTTTCTCAAGATTCAAACTCTCCTAATAGTG
TCAGAACTCGATTAGGGAGTGCTATTAGGTTGATCAAATGCAAAAACATTGTTTCGGAGA
ATTGCAGTTTCACCTGTCACCTAAATCAGGGACCTATTGATTCTTCTGCCAATAGATCAA
ACTCTACAAGTAAATTGCCTCAAACCATCCAGTTTGTTGGTGACAGTTCAGAATGTGATA
AGAATCAAAATGCTGATGGTAAAAAAGATCTTGCTAGAGATCAGGAGAGCATAGAACTAG
AAGGTGTCCTCATTGATCACACTGGCCCAGATAAAATCGACCCGTCACAACCTGGAAGAA
TCGTTCATGAAAACCAACAATGTGAACAACAGAAGGATGGATTTATAGCATATGATGGGG
ATTACTTGATTACACACGAATCAAGTATGGATATGCTGAGATTAGCCCCACCATGCGAGG
CAGATACACAGTTAGTGAATGAGACACTAAACGCTGATAATGTGTTCTCTGGCAATTCCT

Homology of Contig U35_4892 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g41230.2	761	1e-94	protein\|tesmin/TSO1-like CXC domain containing protein, expressed
Brachypodium v1_2	Bradi4g02390.1	772	2e-127
Arabidopsis v10	None