barSeed - Barley Seed Development Database

Probe CUST_3995_PI390587928

Source Contig U35_13398

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3995_PI390587928	Hv_44K_v2	TTTGAGTTGGTTCTTTTGTCCAGTTCTTTATATAAGATCCATGTCGACAACAGTAGATAC	940	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363002	2978	2e-24	2911 - 2970	100	60 / 60	plus	ABC47683
MLOC	MLOC_56552.1	6869	2e-24	3302 - 3361	100	60 / 60	plus	ABC20728 ABC47683
MLOC	MLOC_56552.3	4982	2e-24	1515 - 1574	100	60 / 60	plus	ABC20728 ABC47683
MLOC	MLOC_56552.2	7106	2e-24	3302 - 3361	100	60 / 60	plus	ABC20728 ABC47683
MLOC	MLOC_56551.1	2495	2e-24	2177 - 2236	100	60 / 60	plus	ABC20728 ABC47683
JLOC1	JLOC1_36585.3	7094	8e-25	3734 - 3793	100	60 / 60	minus
JLOC1	JLOC1_36585.2	7055	8e-25	3695 - 3754	100	60 / 60	minus
JLOC1	JLOC1_36585.1	6978	8e-25	3618 - 3677	100	60 / 60	minus
JLOC1	JLOC1_36584.1	2492	8e-25	2177 - 2236	100	60 / 60	plus
Harvest21	ABC47683	621	3e-25	36 - 95	100	60 / 60	minus	ABC47683
Harvest35	U35_13398	1035	3e-25	941 - 1000	100	60 / 60	plus

Contig Sequence (1035 bp)

>U35_13398 1035 Hv_44K_v2
CACTGATGGTGGCACCACGCTGCTCCACTTTGTCATTGAGGAGGTTGTGCGCGCGGAGGG
GAAACGCCTTGCTGTCAACCGCAACTACAGCGTTCGCCGCTCTGGTAGCCTCACAAAGAG
CAGCATCGATGGTGGGATCTCAGCAGCTGCCTCCGTAAGCCAGGGGCCATCGCGAGAGGA
GAGGCAGAATGAATACTTGAACCTTGGATTGCCCATTGTTGGAGGTCTCAGCAGTGAGTT
TACCAATGTGAAGAAGGCCGCGACCGTGGACTACGATGTGACTGCCAATGAATGCGCAAT
TCTTGGCAACCGACTCGTGGGCATCAAGAGGCTCCTGGAGACCTGCGGGGACGACGGATT
CTCAAGAGGGTTGAGAGGGTTTGTCAGTGCTGCGGAACAAGAGCTGAAGAAACTGAGTGG
AGTGCAGGAGAAGGTGCTTGATCTGGTTCAGCGGACAACGGAGTACTACCATGCAGGTGC
TACCAAGGACAGGAACGCTCATCCCCTCCAGTTGTTCGTCATAGTGAGGGATTTCCTGGG
GATGGTGGACCAGGCATGTGTGGACATCAAGAGAAGACTACAGCAAAAGAAACCACCACC
CTCATCATCACAGCAAACAACGGCTGTCGCAGCAGCCGCTAAGGGGCCAGCTGATGGTGC
CAAGGTGCCAGCTGAAGCCGCTAAGGCTGTAGCTAGTGGTGCAGCAGCCACACCATCGGC
TCAGAAACCGCCACCAGAAGAAGCAGATAGCAAAAGGAAGAGGGTCATGCCAAGATTCCC
AAACTTGCCAGCGCATTTTATGAAGGACGGCGCGGACTCTGATTCAAGTAGTGATGAGGA
ATAGAATGTATGGGGAGGTGTAAATGGAGATTGTTTGCATTGGTTTGAATTGGTTGTTTT
TGGAGGTGTAGGCTAGCTGCAGACTGTACATAATGAAATGTTTGAGTTGGTTCTTTTGTC
CAGTTCTTTATATAAGATCCATGTCGACAACAGTAGATACAATTATATATATCCAGACAA
AAAAAAAAAAAAAAA

Homology of Contig U35_13398 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g50570.1	907	7e-106	protein\|retrotransposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi3g59780.1	885	1e-112
Arabidopsis v10	None