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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_39955_PI390587928Hv_44K_v2TTCTTCGGCTACAAATGTGTAGTGCTTGGACATTTGTTCCCTTAGAGACCCGCCAAAGTA2191GeneList: yellow
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.6142.2341.2120.6190.2400.270
Raw 5221.7806823.6703350.9932706.819362.055448.105



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_10482.740796e-245 - 6310059 / 59minus ABC10866
MLOCMLOC_10482.471186e-2436 - 9410059 / 59minus ABC10866
MLOCMLOC_10482.235556e-2436 - 9410059 / 59minus ABC10866
MLOCMLOC_10482.335586e-2436 - 9410059 / 59minus ABC10866
MLOCMLOC_10482.671356e-2432 - 9010059 / 59minus ABC10866
MLOCMLOC_10482.560036e-2436 - 9410059 / 59minus ABC10866
MLOCMLOC_10482.159536e-2465 - 12310059 / 59minus ABC10866
JLOC1JLOC1_6865.558863e-245698 - 575610059 / 59plus
JLOC1JLOC1_6865.471403e-246952 - 701010059 / 59plus
JLOC1JLOC1_6865.360263e-245838 - 589610059 / 59plus
JLOC1JLOC1_6865.241203e-243932 - 399010059 / 59plus
JLOC1JLOC1_6865.140793e-243891 - 394910059 / 59plus
Harvest21ABC1086622533e-252192 - 225110060 / 60plusABC10866
Harvest35U35_489822533e-252192 - 225110060 / 60plus



Contig Sequence (2253 bp)

>U35_4898 2253 Hv_44K_v2
GCTCATATTCACGGAAGAGTTCATTATACTGAAATTGTTGATTCGTGGGTAGCTGAACCC
CTATCTGGAATCCATGAAGGTCAATTTGTAAAGTGCAAGGTCCTGGCTGTAAGCCGCCAA
TCTGAAGGATCTGTCCGAGTTGACCTATCACTTTGCTCAAGAAATCTTGATGATTTGACA
ACTTGCACTCCCCGGTTTGAGAAGGTGAACGATCTGTGCCCCGGTACAGAGGTTAAGGGT
TATGTGAAGAATGTGAACGCCAAAGGATGTTTCATCATGCTTTCTCGAATGGTTGATGCT
AGGATTATTTTATCAAATCTATCAGATGAGTATGTCCAGAATCCTCAGAAGGATTTCTCA
GTTGGGATGCTTGTACAGGGAAGGGTATTGTCTGTGGAATCACTATCCGGAAAAGTTGAG
GTATCACTTAGGAAGAGCACTGGTAGCAAATCACAGAAGTTGGATGCCATTAGCTACAGT
GATCTACATGTTGGGGACATCGTTGATGGTCAAGTTAAACGGGTTGAATCCTATGGATTA
TTTGTGACAATCAAGAGCAGCGAACTGGTGGGCTTGTGTCATATATCAGAACTTTCTGAT
GAACCAGTTCTTGATATCAATGCTTGCTACAGAGCTGGCGATATGGTTAAAGCCAAAATT
TTGAAGATTGATCAGGATCGGCACCGAGTGTCCCTTGGCCTTAAAGAATCTTACTTCGAC
TCTGATATGACTGATGATGAAAATGACAACGAGAATGATGGTGAAAGGGTTCCCATGGAC
ATCAGCCGTGCCCCTCAGATATCTGGAGGTTTCAACAGCACTTCATTTCTTCCTGGACCA
GAACCCAGGGCTTCTATTCCCGCACTTCAGGTCACCTTGGACGAATATGAAGGTTCTGAC
CAAGAGGGTGATCAGAAAGGTCATGAAATTGCTAATGGAAGTGAATCAAATGTAAAAAAG
AGCGATAGACGGTTAAAGGAGAAGGCGAGAAAACAAAGGGAAATAGAAATCAGTGCCTTG
GAGGAAAGGGCTTTACAGAAAGATACACCACAGACTCCAGATGAATTCGAGAAGTTGGTG
AGGAGCTCCCCAAATAGTAGCTTTGTGTGGATAAAGTATATGGCATTTTTGTTAGACCTT
GCAGATGTCGAGAAAGCACGTTCAGTAGCTGAAAGGGCTTTGAGAACAATAAACATTAGA
GAGGAGGAGGAGAAACTCAATGTATGGGTAGCATACTTTAACCTTGAAAATGAATATGGG
AGTCCACGGGAGGATGCTGTCAAGAAGATATTCCAAAGAGCCTTGCAGTATTGTGATCCC
AAAAAGGTGCACTTGGCTCTTCTTGGAATGTACGAGAGGACTAAACAGAATGAACTGGCA
GATGAACTTTTCGATAGAATGACCAAAAGATTCAAAACTTCGTGCAAGGTCTGGTTGCGC
CGCATTCAGTTTTCTCTCACTCAAGGCAAGGATGTTGAATACATCAAATCTGTCGTAAAC
CGAGCGCTTCTTAGTCTGCCACAAAGCAAGCGTATAAAGTTTCTCACGCAGACTGCTATC
CTGGAGTTCAAGTGTGGGGTGGCCGAGGAAGGGAGATCCAGATTTGAGCTGATCCTAAGG
GAGTATCCGAAAAGAACAGATATTTGGAGTGTTTACCTAGACCAGGAAATTCGACTTGGT
GACACGGAAATTATACGAGCCTTGTTTGATAGGGTGACATGCCTTAGTCTTCCTCCAAAA
AAGATGAAGTTCTTGTTCAAGAAATACCTACGATATGAGAAGGCTCAGGGCGATGAAGAA
AGAATCGAGCATGTGAAGCAGAAGGCAATGGAGTATGTTGAGATTTCTAGAGCCTGATGT
GCAAAACCTTGCCATCGTGCAGGAGTCATCTGCTTGCTGGGGTAAACTATCCACGTGATC
TTGGATGGTGATCTGCAGCTCACCTTCTTGAAATGCTGCTAATCAGAGGTCTGCATTCCT
TCTTATTTGCGCGATGTGATTGTGGCAGAGAATGTGCCAGTCAGGGCTGCAGCTTTTATG
CACATGTGCGGTCCGCCAATTTTGGTGTTGTTACACTTGTGATGATATATGTTTTGCTAT
TAATAGGGAAGACAGATGATTCAATTTTGTTGCAAACACCTCACACATCATTCGTGTTGT
TTAGAAATTGCGAGTGCAGACTGAGTAGAAGTTCTTCGGCTACAAATGTGTAGTGCTTGG
ACATTTGTTCCCTTAGAGACCCGCCAAAGTACC



Homology of Contig U35_4898 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os07g10350.18840.0protein|S1 RNA binding domain containing protein, expressed
Brachypodium v1_2Bradi1g38227.118850.0
Arabidopsis v10AT3G11964.118960.0RNA binding;RNA binding | chr3:3793957-3806626 REVERSE LENGTH=1896