barSeed - Barley Seed Development Database

Probe CUST_3993_PI390587928

Source Contig U35_13399

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3993_PI390587928	Hv_44K_v2	AGGCATATGAAGAAGCAGGAGAGATTCATGTTAGGCCGGGAAATGATGGTGATTCAGAAC	537	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.580	1.504	1.143	0.744	0.279	0.292
Raw	199.098	290.111	198.504	204.193	26.959	30.549

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC42915	392	3e-25	48 - 107	100	60 / 60	minus
Harvest35	U35_13399	627	3e-25	538 - 597	100	60 / 60	plus

Contig Sequence (627 bp)

>U35_13399 627 Hv_44K_v2
CTATTATCCAAGCTACGACCGGGCGAGTCCTTATTCCAGCCATGGTCTATGGGACAAGCG
TAAGGAATCAAGATTAATAAGGGCTGTACTGAAGAATATGATCATCTCAGGGCTCCAGAA
TTTCGACCGGAGTAATATTGCATCTGTTGTCACGGCTGCAGATAGCGGTACTTCATGGGC
TGTTTGCGTGCATCGAGCGGCTGTTGTCGTCGCTGAAGGTGAAGCACTTTGTGCTGCCGG
AGACGGACGAAGCGGCATTGATCTGTATGCAGTGGTTCGGGTTCCGCAAGGTAACATACG
ACAAGCTGCTGGAGCACCTCAAGGGCGGGTGCACGACGGTGTTGCATGGAACGTCAACCC
AGCACAAGCTGGTCCCGGTGGTAGAGGCTGGGGCGCGGGGTCTGAGGAGGAGGAAGCGCC
GGCGCCAGCACCCTCGGACTAATGTAGCTAGTGTTTTCCTTTGGGAGAGGATGGATTGAT
GGTGTAATGTAGAGACAGGGGTGTGTTCTGTCTCTGGGGGTTGTGTGTTTGTTAGGCAGG
CATATGAAGAAGCAGGAGAGATTCATGTTAGGCCGGGAAATGATGGTGATTCAGAACGCC
GCTTCTGCTGGTGATGAATGTGTATCA

Homology of Contig U35_13399 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None