barSeed - Barley Seed Development Database

Probe CUST_39939_PI390587928

Source Contig U35_21916

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39939_PI390587928	Hv_44K_v2	AGTATGTATACCGATACCGTTGAGGGGGGCGTAATGCATATACAATTTCTGTGGGTCAAA	702	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.239	0.259	1.135	1.920	1.232	1.136
Raw	670.255	1104.522	4432.853	11098.180	2657.577	2638.897

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_45138.1	2235	2e-23	434 - 491	100	58 / 58	minus	None
MLOC	AK360312	2236	7e-23	2180 - 2236	100	57 / 57	plus	None
JLOC1	JLOC1_29296.1	2004	1e-23	203 - 260	100	58 / 58	minus
Harvest35	U35_21916	776	3e-25	703 - 762	100	60 / 60	plus

Contig Sequence (776 bp)

>U35_21916 776 Hv_44K_v2
TGGTTTTTTGGGGGTCGAAAGATACCGGCGACGATGCTTCTTGAAGGCGTCATCGTAGAG
TCCTCACACTTCTTCAGGTTGTGGGCATTTTGGCGGTGACGTTTGAGTTGACGTCGGTAA
GGGTTGCACGATTGGGTTGCACGATTGTGCTTTGTTCAGTCTTGTGTTGTAAGTTTTTTT
GGCCTAGTTTTTCTTATAAACCGGGCCACTTTGTCTTCTTTCTTCTCTCTTAATGAAAAT
CGGCAGCGCTCCTGTCTTGCATGCTAAAAGAACCATACAAAAAAACAAGCTGCATGCAAG
TATATGTTCGAGCGGCCGCTCGACGGCGTGCACTACGGGCGTGCACCGGCAAAGTTGGTA
TGGCGGGACGGGAAGATCGGCCACCAGTACTTCGTGGACCTCATGCTGGGGCATGTGCTC
CTCAATGCCATCTGCAATGGATGAAAGTTCCATCATGCTCTGTAAGTTTGTGCAGCTCAA
TTGTGTGCTAGAGTAGGATAGCCAAGGAACTGGGGTTGCTGAGGTGAAATCGTGGTATCA
GTTCATGTGTACCACACATATCGTCGCGGGCATAGCTGAACCGTTTTATATGGCGAGACC
GTCTGATCATTCAGCTATGTTGCTGGTCTGATCTTGCTATAGCTGGCAAGGATGGTCGAA
GTTCGATCGGAGCTAGCTTTGGCTGAAAATCAGGTACATGTAAGTATGTATACCGATACC
GTTGAGGGGGGCGTAATGCATATACAATTTCTGTGGGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_21916 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None