barSeed - Barley Seed Development Database

Probe CUST_39933_PI390587928

Source Contig U35_19602

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39933_PI390587928	Hv_44K_v2	TAGGTACGAGGATACATACATCGCAATTGCATTGCATCACGCGTCGCATTGGGTTTAGAT	55	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71159.1	3219	2e-24	381 - 440	100	60 / 60	plus	None
JLOC1	JLOC1_47260.1	3040	8e-25	241 - 300	100	60 / 60	plus
Harvest35	U35_19602	469	3e-25	56 - 115	100	60 / 60	plus

Contig Sequence (469 bp)

>U35_19602 469 Hv_44K_v2
ACAGCAGAAACCCACCAAGAGCTCGTCAAAAACAGCGCCTAGCTAGCTAGCGAGCTAGGT
ACGAGGATACATACATCGCAATTGCATTGCATCACGCGTCGCATTGGGTTTAGATCCTGG
AGCTAGCGGTGGTAGCGGTAGAGCTTGGCTAGCCGTTACGTAGTATGGCACCAATGGGTG
TGTGGAGGAGCAATAGTGGTGTCACGCTCGCGCTGTCACTGCTGGTCCTCCTGCTGCACT
CGGCGTCGCCGGCTCGCGGCCAGGCGTCCGACGGCGTGGTGATCGCGCAGGCGGACCTGC
AGGGGCTGCAGGCCATCCGGCAGGCGCTGGTCGACCCGCGGGGGTTCCTGAGCGGGTGGA
ACGGCACGGGCCTCGGCGCCTGCTCCGGGGAGTGGGCCGGCGTCAAGTGCGCGCGCGGCA
AGGTCGTCGCGCTGCAGCTGCCGTTCAAGGGCCTCGCCGGCGCGCTCTC

Homology of Contig U35_19602 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None