- Probe CUST_3992_PI390587928
- Source Contig U35_49327
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_3992_PI390587928 | Hv_44K_v2 | ACTACGTTGTGGTTTTGTGCATATACTTGCGTCGACTCGTCACCTGTGGTGAGTTGTAAA | 14 | GeneList: red MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.101 | 1.603 | 1.451 | 1.045 | 0.316 | 0.596 |
| Raw | 97.095 | 221.611 | 172.947 | 194.678 | 21.077 | 42.405 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_45968.1 | 584 | 7e-23 | 124 - 183 | 98 | 59 / 60 | minus | None |
| JLOC1 | JLOC1_29805.1 | 581 | 4e-23 | 121 - 180 | 98 | 59 / 60 | minus | |
| Harvest35 | U35_49327 | 491 | 3e-25 | 15 - 74 | 100 | 60 / 60 | minus |
Contig Sequence (491 bp)
>U35_49327 491 Hv_44K_v2 TTTTTTTTTTTTTTTTTACAACTCACCACAGGTGACGAGTCGACGCAAGTATATGCACAA AACCACAACGTAGTACGTACAGTACAAAAATTGGCAGCAGAACTCTCTAGGATATCGCAA CAGGCAGGTTTACATTTTAACAAAGCATACTTGTTAATGCACAGGCCTGCTCCTTGACAC ATCAGAAATGATCATGCTTACCATCAGAGGTGGCGATGAAACATCCGCTCCCTTGTTGGC CCGAGTTTATCAATCAACCCGCTGAAGCACGCATGCCACAGCTCTTGGTTCAACTGAGGT TATGCCGGCATGACAACTCCGAAGAAAATACAACTTCTCATGCACCAAGTAAACACTGAA GGGCTCTGTTTATTGACCGCCGCTCCAGAAATAATAATTTATTCTCCATCGAACATCAAG GTAACGAACATCTAGATTACATTTCAAAAAAAACATCTAGATTAGCGCCTCAAACCCTAA TACAATGATGG
Homology of Contig U35_49327 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |