barSeed - Barley Seed Development Database

Probe CUST_39926_PI390587928

Source Contig U35_21920

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39926_PI390587928	Hv_44K_v2	CGTCCGTCATTAACATTGTCCATAAAGTTGATGAAAATTACCCACAATTGCCACTTAAAA	745	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.448	3.093	1.091	0.872	0.379	0.200
Raw	151.833	304.585	92.034	116.399	18.817	10.289

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_47967.1	567	4e-23	497 - 553	100	57 / 57	plus
JLOC1	JLOC1_27928.1	733	2e-21	453 - 509	98	56 / 57	plus
Harvest21	ABC16657	818	3e-25	746 - 805	100	60 / 60	plus	ABC16657
Harvest35	U35_21920	818	3e-25	746 - 805	100	60 / 60	plus

Contig Sequence (818 bp)

>U35_21920 818 Hv_44K_v2
CCAACAAGAGGAAAAACAAGAGGAAAACCCCAAGTTCACACGAGAAGAAGAGGTGAAAAC
CCAGCAATGTCGGGGCGGCGCGGGCGCGGAGGCGGAGGCAGGAGGCCGACGAAGGCGGAG
CAGCTGATGCACGGCGCCATCGACCATTTCGGACGGATGGGCTACGCCGAGGCCGACATC
CGCAACACTGTCAGGCAACTCATCGAGGTCTATGGGGAGGATGCTTCGTCGTTCCTGAAG
GAAGATGACTACCGGGTGGTGCAGGACGCGCTGTTTGAGAAGCAGGAGCAGGAGGAGGAG
CCTAAACAAAAGGAAGCAGCAATCTCTGAGGCACCAGTAGCAAGTGGCATGCACAATGAG
ATGCCACCTGGGGCTGAGTTATCAGTTGAGGGAGCAGACCCTATGCTCATCGACCCGCGT
GCTTCTGAGGCTACAATGTCACGTCCTGCAGCTAGAGGAACTAGTAGTGCAAGGCGTCCG
TGCTATGGATGGATTAGCGAATCTGAGAGTGATTCGGACTACGAAGAATACCTCGCCAGT
CGACGACAGGAGATGCATGCTTCAATTCCAGGAAGCGGCTGAGTGCGTGGAATGTGAAAT
GAAGCCCCACTTAACTGGCAGGCACAGGGCTGACTTCACTGGGTGGGTGCTGAGGTCGAG
TGAATGAAGTGTCAGAAAAACGTCTTATATTTTAAGATAGAGGGAGTATATCTTTACCTA
CTAATAAAGCAATTAGTGCTTCTGCCGTCCGTCATTAACATTGTCCATAAAGTTGATGAA
AATTACCCACAATTGCCACTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_21920 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None