barSeed - Barley Seed Development Database

Probe CUST_39924_PI390587928

Source Contig U35_21922

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39924_PI390587928	Hv_44K_v2	TCCCTTTTTTATGCTTTCAGAAATTGCAGCATCCCTAGCTTTCAGAATTCACCTCATTTA	551	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.508	2.056	1.178	0.679	0.211	0.222
Raw	575.561	739.322	375.077	343.775	37.830	42.802

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55024.2	1628	2e-24	1496 - 1555	100	60 / 60	plus	None
JLOC1	JLOC1_35462.1	1435	8e-25	1349 - 1408	100	60 / 60	plus
Harvest35	U35_21922	698	3e-25	552 - 611	100	60 / 60	plus

Contig Sequence (698 bp)

>U35_21922 698 Hv_44K_v2
ACTTGAAGGAGTGGTCTGTGATCCCTTTGAAGTTGAGCTTGTCTGTAGGGTTTGCCTTGT
GCTGCTTCAAACACATCACAACCAGTTAACTACTACACCAGCTGCAAGATCCATACTGAC
AGAACTGAAGGATATTCTTTATGGTAGAGTGAAGGACTGCAAGGACACTATAGGTTTCAA
TCTCGCAGCAATGGATCATATAAAGGAACTGTTGACGATGAGATCAGATGCGCCGTTCCG
GGACGCCAAGGCGAAGCTCATGGAGATCAGGCAGGAGCAGTCGAAGCGGTCGGATAGGTC
GGGTGGGGGCGAGAGAAGGAAAAAGAAGAAGCCCAAGCCGTCTGTACAGAGCTGAGCAAG
GATCTGTCTGTTTTTACTCAACTGTTGTAGCGTATACGCACCACACTGGGTTATCGCGTT
CATTTCATGCTGTCATGAGCACAGCACAATTTTGAGAGATGTGTGTGTGGGCCAGTGTTA
ATCGGCGGTTTCCTACTAGAGAAACATGGCGTACCTCCCTCTTTTTAGATAGTCAAGATT
TGGTCAAACCTTCCCTTTTTTATGCTTTCAGAAATTGCAGCATCCCTAGCTTTCAGAATT
CACCTCATTTAGAAAAAAAATCAAAGATTCAAAGCATTTGAAGTATCGAACTTCTGGAAA
GGAATTCAAAATTTTAGAAAAAAAAAAGAAAAAAAAAG

Homology of Contig U35_21922 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None