barSeed - Barley Seed Development Database

Probe CUST_39915_PI390587928

Source Contig U35_19610

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39915_PI390587928	Hv_44K_v2	CTATGTTAAACATTGCGTTGATGTGAAGGATGTTTATTTCTGGGAAACATCGCATTATTC	1996	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59182.4	7018	2e-24	4164 - 4223	100	60 / 60	minus	ABC29553 ABC35055
MLOC	MLOC_59182.6	5923	2e-24	2586 - 2645	100	60 / 60	minus	ABC29553 ABC35055
MLOC	MLOC_59182.9	2626	2e-24	1031 - 1090	100	60 / 60	minus	ABC29553 ABC35055
MLOC	MLOC_59182.10	4375	2e-24	2457 - 2516	100	60 / 60	minus	ABC29553 ABC35055
MLOC	MLOC_59182.5	7458	2e-24	5193 - 5252	100	60 / 60	minus	ABC29553 ABC35055
MLOC	MLOC_59182.7	4510	2e-24	2523 - 2582	100	60 / 60	minus	ABC29553 ABC35055
MLOC	MLOC_59182.8	3020	2e-24	1033 - 1092	100	60 / 60	minus	ABC29553 ABC35055
JLOC1	JLOC1_38496.1	2979	8e-25	1919 - 1978	100	60 / 60	plus
Harvest35	U35_19610	2076	3e-25	1997 - 2056	100	60 / 60	plus

Contig Sequence (2076 bp)

>U35_19610 2076 Hv_44K_v2
TCTCCGTCGGCATCACCGTTCCCCTCTCCCCCCTCCTCTGCCTCCGCTCTCCCCCAGTGC
CCCCCCCCCTCCCCCTCTTCACCGCAGAGAGAGAAAGAGAGGGCCAGAGGGGGCGCGTCA
TCTCAGATCAACAATGGCGGACTGGACCAGCGATAAAGATGATAGTGATAAGTTTGAGTG
GGAAAGTGATGGTGAGGCTGAACCCTCATCGGCTCCGGCCTTCGGGAACTTGGATGCTGC
TGGTCCGTCCACGCTGGACTCTAATGGGTGGGCCAATGAGGAAGCACCACCCACTTCGTT
AGTCGAGGGATATGTGTTAATGGGTTTCCCAAAAGAGATGGTCTTGAAGGGAATTAAGGA
GATTGGGCACAGTGATGCAAATGCGTTGCTGGAACTACTTCTCACATATAAGACACTAGG
TGAGGACGCTGCAGTGGGTAATTGCTCCACTTCTGGCTGCTTCCCTCAGAGTGTTGAAGA
CGATGATGATTTTGATTTTGAAAACTGGGATGGAGACAATGATGCTGATGGGAGAGAGCC
AAACCCTGATAGTTCTGGTGATGAGGATTTCCTAAGAGAGATGTCAGAGAAGGACGACAA
GATCAAGTCCTTAGTAGACATGGGCTTTCCTGAAGATGAAGCAAATATGGCTATTACCAG
ATGTGGTGTGGATGCCGCTCTCACTGTATTAGTTGATTCAGTCTATGCATCACAGGCTGC
AGGAGATTGTCACTATGGGAACTTATCTGGCTATGAGGTTACTGGTAGCTGCTTTGATTC
TTTGGGAGTAAGAAAGAAAGCAAGATTGATGGAAGATAGCAAGAAAAAGCGGAAGCAGTA
TGGAGGTGGAGCACAAGGAAATCGACGGCCCTTGGATGGTAACCATGAAGAACCGATGCC
TCTCCCAAATCCAATGGTTGGATTTAGCCTGCCTAATGATAGGCTACGATCAGTGACCAG
ACGGCTTCCTCAACAAGCTATTGGGCCACCTTTCTTCTACTATGAAAATGTGGCACTAGC
TCCAAAAGGTGTCTGGGCGACGATTTCAAGATTCCTGTATGACATTGAACCGGAGTTTGT
GGATTCTAAGCACTTGTGTGCAGCTGCTAGAAAAAGAGGATATATCCATAATTTGCCAAT
TGAGAACAGATTTCCTGTCCTGCCTCTCCCTCCAAAGACTATATTTGAGGCCTTTCCTCA
TTATGAGAAGTGGTGGCCTTCTTGGGATCCGAGAAGGCAATTCAATTGTTTGCAGACAAG
CATGTCAAGTGCGAAACTGACAGAAAGAATCCAATGTGCTCTTGCAAACTCAGGCAATCC
ACCACATAGAAGTGTTCAAAAGTATGTCATGGATGAGTGCAGAAAATGGAACCTTGTTTG
GGTTGGAAAGAACAAAGTTGCCCACCTGGAGCCGCATGAGGTAGAATATCTGCTTGGTTT
CCCAAGGGACCACACGAGGGGAGTTGGCAAAACAGAGAGGTTCAAATCTCTTGGCAATTC
GTTCCAAGTAGATACCGTTGCTTATCACTTGTCAGTGCTGAAGGACATGTTTCCCAATGG
TGTTAATGTGCTATCTTTATTCACTGGTATTGGAGGAGGAGAGGTAGCACTGCACAGGCT
TGGGATCCACATGAGGACAGTAGTTTCTGTTGAGATAGGTGAAGTTAATAGGAGGATTTT
GAGGGGTTGGTGGGATCAGACTCAAACTGGCACATTAATTGAGATTGCTGATGTGAAATC
TCTTACTAACGATAGAATTGCAACATTTGTTAGAAGATTTGGCGGCTTTGACTTGGTGAT
TGGGGGCAGCCCATGTAACAATCTTGCTGGCAGCAACCGGCACCACCGTGATGGCTTGGA
GGCCGAGCAATCTGCTTTATTCTACCACTACTTCAGAATCTTAGATGCTGTAAAGTCGGA
AATGGCAGCGATGTAGCCTATTCGTTTTAGTGCATGTTTATCATTTCATGCTTGTCTCTA
GGAACCACAACTTCATCTATGTTAAACATTGCGTTGATGTGAAGGATGTTTATTTCTGGG
AAACATCGCATTATTCTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_19610 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g02010.4	508	0.0	protein\|DNA methyltransferase protein, putative, expressed
Brachypodium v1_2	Bradi4g05680.1	589	0.0
Arabidopsis v10	AT5G14620.1	626	2e-167	\| Symbols: DRM2, DMT7 \| domains rearranged methyltransferase 2 \| chr5:4715429-4718578 REVERSE LENGTH=626