barSeed - Barley Seed Development Database

Probe CUST_39909_PI390587928

Source Contig U35_19615

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39909_PI390587928	Hv_44K_v2	TCTCTCCATGGACATGTTTTCCAGTTGCCAGCAATTGGCCACAAAAGAAACTGGCATGAT	1082	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.814	1.945	1.343	0.720	0.254	0.264
Raw	73.739	129.614	75.362	63.348	8.160	8.878

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65846.1	720	2e-24	542 - 601	100	60 / 60	plus	ABC11737
JLOC1	JLOC1_43355.1	744	8e-25	547 - 606	100	60 / 60	plus
Harvest21	ABC11737	1154	3e-25	1083 - 1142	100	60 / 60	plus	ABC11737
Harvest35	U35_19615	1154	3e-25	1083 - 1142	100	60 / 60	plus

Contig Sequence (1154 bp)

>U35_19615 1154 Hv_44K_v2
GCTCGTGCTCCCTCCCCATCCTCCCATCCACTCGCCGCACGCACGGGGGGTGGTCTGTTG
TCCCTCGAGTCTCTGCCGTCCTCGCCGTGGGTTCCAACAAGAGCGGGGGAGACGCCGGAG
ATGGGTTCTTGCGCGTCGGTCCACAAGGACGACGTGGGGCTGCCCAAGAAGCAGCTGCTC
GCCTCCTCGCCGCCGCCGTCCAAGGACACCAAGGCCGTCGACGGCGCCCCGCTAGGCGAC
GTGCTCGTCGACCTCAAGCGCAAGATCGAGGGCTTCGGCCCCAGCAGGACCCCCGACTCC
GGTAGCAAGGATGAAATGTTCTTCGAGTCCCAACCGTGGTTAGATTCTGACTGTGAGGAT
GACTTCTACAGTATAAATGGAGATTTCACTCCGTCCCGTGGCAGCACTCCGGTCCATCAA
CCCAGGGCGCAGACCGTGATGAGCAACGTCTTTCTACCTGACAATGCCGCGCACAGCCCC
AATTCATCAGAGGCTTCACCAACCGGCCGAAGAAAACTAGCCGACCTCCTGCAGGAGGCG
ACGCGGAACGACACGGGAGAGGCCGCCGCCGCCGCCGCCGCTGCAGAGCCAGACAGCAGC
AAGAGCGGACAGCAGGCCGTCGCCCCAGCAGCTGGGAAGTCTGTGTCGGAGCCCAGCTCG
GGCTGCAGCACGGAGCCGACGCCGGTGAGAGAAGCCAGGATCCGGAAAGAGAGGGCCTGG
TACTCCGGCCGCTGCTGCCTGCCAACCTTCGTCCACAGCCTGGCCGCCCTAGACGACGAG
GGGCGGCAGAAGACGGGCCCCGGGCCCTGCGCCGTCTGACTGACGGTCGACGACGATTCC
CGCTCCGAGCTGTATCTACGAGTATGATATACTACGACTACCTGATCCAGCCCCTGAATC
GAGCTACTGTAAAGATGGCGAGAGTGCTGAGAGTGCTATATATATAAATATGCTTGTAAT
AATCAAGCGAATAGTCCACTCCAGGGAGTTCATCTGGAACCCTACCTAGCTCGGGAAAAT
GCTTCGGCCTGTGCATAACTTTAATCCTGTTGCCTGCCTCTGATCTGAGTCTCCGATTGA
TCTCTCTCCATGGACATGTTTTCCAGTTGCCAGCAATTGGCCACAAAAGAAACTGGCATG
ATGCCTCTGTGTGT

Homology of Contig U35_19615 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g69100.1	232	2e-86	protein\|expressed protein
Brachypodium v1_2	Bradi2g58950.1	230	2e-99
Arabidopsis v10	None