barSeed - Barley Seed Development Database

Probe CUST_39905_PI390587928

Source Contig U35_19619

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39905_PI390587928	Hv_44K_v2	TCTTGTCAGGATTCTACATGGCATGGAATATTGGAGCGAATGATGTGGCAAATGCCATGG	514	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6818.5	2502	2e-24	789 - 848	100	60 / 60	plus	ABC14703
MLOC	MLOC_6818.4	2493	2e-24	966 - 1025	100	60 / 60	plus	ABC12263
MLOC	MLOC_6818.6	4448	2e-24	416 - 475	100	60 / 60	plus	ABC12263 ABC14703
MLOC	MLOC_6818.3	1695	2e-24	966 - 1025	100	60 / 60	plus	None
MLOC	MLOC_6818.2	5215	2e-24	1000 - 1059	100	60 / 60	plus	ABC12263 ABC14703
MLOC	MLOC_6818.1	1958	2e-24	1099 - 1158	100	60 / 60	plus	None
JLOC1	JLOC1_4461.1	3233	8e-25	975 - 1034	100	60 / 60	plus
Harvest21	ABC11639	770	3e-25	515 - 574	100	60 / 60	plus
Harvest35	U35_19619	770	3e-25	515 - 574	100	60 / 60	plus

Contig Sequence (770 bp)

>U35_19619 770 Hv_44K_v2
CACCGCTCCCCATTCCTCTCCTACTCTCCCCTGATCATATCATCTCTTTCCTCTCGGTGC
TTCCCCCCTGGTTTTTGCTTCTGCCACTCCATGTCTCAATCTTCTCCTTTCTTTTCCATT
GCCCGAGCACATGCTGGAGCAGGAGGGCGAGCTGCGGCTGCCGCTCTCCTGCTCCGTTGC
CCTGCCGCTCAGCTGCCACCTACCATTCACTGCTTCCGTCTCGCTAAAGTGTCGCCTGCC
AAGACACTCAACTCGCACCTGGCGCTTCCGCGCGCCACACTGTCCTCCTTTGCAAACGCT
GATGATGATGGCTCCAGTGCAAAACCAGATGCCTCGGGGGAGCAGAACGGAGGATCCGAG
CTGTCAGAGATGGCAAAGGCATTCCATATTTCACCACGGATGGCCATGTCAATCTCTGTG
CTGATTGCATTTGCAGCTCTCACTGTTCCACTCGCGATGCGCTCGCTGCTCTTCCATGGG
ACGACCAAGATGAAGGTATTGGCATATCTGACCCTCTTGTCAGGATTCTACATGGCATGG
AATATTGGAGCGAATGATGTGGCAAATGCCATGGGGACATCGGTAGGATCTGGTGCTTTG
ACTCTCCGGCAGGCAGTGCTGACTGCAGCTGTGCTAGAGTTCTCTGGAGCTTTCCTTATG
GGTACCCATGTCACCAGCACCATGCAGAAGGGCATCCTCGTCACATCTGTCTTCCAAGGA
AATGATTCTCTGCTCTTTGCTGGATTGCTGTCCTCCCTCGCTGCTGCTGG

Homology of Contig U35_19619 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g38020.2	510	3e-95	protein\|inorganic phosphate transporter 2-1, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi3g47550.1	570	5e-102
Arabidopsis v10	AT3G26570.1	613	1e-51	\| Symbols: PHT2;1, ORF02 \| phosphate transporter 2;1 \| chr3:9756261-9758413 FORWARD LENGTH=613