barSeed - Barley Seed Development Database

Probe CUST_39903_PI390587928

Source Contig U35_21931

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39903_PI390587928	Hv_44K_v2	TAATCTCAAGCCGTTGCAGAACCTTATTTATAATTAGAGCATAACTTTGAGGGGTTTCTT	564	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53145.1	1431	3e-22	1 - 56	100	56 / 56	minus	ABC25967 ABC26118
JLOC1	JLOC1_34114.1	1491	8e-25	1375 - 1434	100	60 / 60	plus
Harvest35	U35_21931	655	3e-25	565 - 624	100	60 / 60	plus

Contig Sequence (655 bp)

>U35_21931 655 Hv_44K_v2
CCGGGCTGCAGGCTTTTAACACCACAACTTAAGTCTACAACTAACCTTTTCGGTACAACT
GGATCAGCCCAGCTGTCCACACCATTTGGGACATCCTCCACTCCTACACTTGGATCAACA
CCAACTCCGTCTGGATTTGGTGGGGGTATTAGCCCATCTTTTCCTTCAACGCCTGCTTTA
ACTGGAACTTCACTATTCTCTACACCATTTGGAGGCGGGGCTACAGCTTCAGGGTCCAGC
TTTGGCGGCACATCTAAGGGGAGGTCAAAGGCCCGAGGCCGGCGCTAGACGTAACTTGAT
CGGCCGTGAAATGCGGGCGGGGCCGCCTCTTGTATCTCCTGTCTACTGAGAACAAAAAAC
TTGTAATTAATTTTCCAGGCAATTCTAGGAGAGCTATATATCTTGTCAAGTGCTTGGTAC
CAGATTCATTTATCTAAGGCTTGTTGTTAGCTTCGTTCCGGCTGTGGACCTCCTCAGTGA
TAACAGAGCTCAGCATTCCTATTTTTAGGGGCAACGGTTGTAAACTTGTATTAACAGTAC
AACTAGTTTGTGATTGCCCTCGAGTAATCTCAAGCCGTTGCAGAACCTTATTTATAATTA
GAGCATAACTTTGAGGGGTTTCTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_21931 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None