barSeed - Barley Seed Development Database

Probe CUST_39902_PI390587928

Source Contig U35_21932

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39902_PI390587928	Hv_44K_v2	GTATAGTTTCTAATGGGAGGGACATGAGCTGCCATTTCTTGCTCTATTGGGCTTAAAAAA	1057	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.041	1.000	1.367	1.199	0.512	0.627
Raw	130.639	195.715	237.918	318.694	49.443	64.727

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61488.2	2939	9e-22	2831 - 2885	100	55 / 55	plus	ABC23413
MLOC	MLOC_61488.6	2677	9e-22	2567 - 2621	100	55 / 55	plus	ABC23413
JLOC1	JLOC1_40183.1	2503	5e-22	2418 - 2472	100	55 / 55	plus
Harvest35	U35_21932	1128	3e-25	1058 - 1117	100	60 / 60	plus

Contig Sequence (1128 bp)

>U35_21932 1128 Hv_44K_v2
CCAGTCCTGAAAGCGAAGACATAAAAAGGGTCACAAGCATAAGAAGCATTATGATGATAG
TTCTGATTCTGATTCTGACTCAGATGACAAGGAGTCCAAGAGGAGGAGGCGAGAAGAAAA
AAAGCTGCGAAAAGAGGAAAGGCGCCTTCGGCGTGAAGAACGGCACCGCAGAAGGGCGGA
CCGTCATGCCAGTAAACAGAGATTGAAGTATGCTGGTTCTCCCCTGTCAGATCTTGAGAA
GGATCGTCAATCTGGCTCAGACGCTGATGTTGGGAAGAAAGGTTCATACACTCCGAGAGA
AGAACCTGACCCAAACAAACTTGAAATTGAGCTTCGACAGAGGGCCCTCGAATCTCTTGC
AAAGAAATCAAAGCATGTTGTCACTCCGTCTTCAGATGTTGAGAAGGACCATGAATCTGA
CTCGGATGCTGATGTTAGGAAGAGAGTTTCATAGGCTGGCTGAGAAGAATCTGATAAAAA
TAAACTTGGAAGGGTTGAGCTTCGGGAGAAGACCCGTGAAACTATATAGATCAAAGAAAG
CTGCCAATCACTAGGCTGGGGAACTTCTTGCAATGCATTTACACGTTTCTATTTTTCAAG
AACATACCTATATGTTATTGAAGTGTGCTCATATGATACCTGTTTAATGTTCTGTATGTT
TATGTGGCAGTTGATCTGAGTAATTGACGATTCCTGAGCTGTTTCCTTGTTGCAGCTGCT
TTTATCTGATTAGCACCATGTGAACAAGGTTTTTATGTACCAGAGATTTAACAGCACCTC
AGCGACACCCAGCTGGTTGCACCTTTGATGATTGTGAAACTCTCCTAAAGTGCTCCTGTT
TCGTTTGGTTCCTGCTCCTTAGAACAAGGTTTGTGCAGTATGCTTTTTCATGTGTGTGTG
GCTAGCAAATCAAATTTCTTGTAAGTATTTGAAGGCTCTGCTATCCTCACAAGAACGCCC
ACGAGCATTTTACTATTGAATGAACACGAGTGTTCCTTTTCTATTTTGTGGTTTCTAGCA
TTCAGGTGCAAGTCTTGGACAGGAGTTATATTGCTTTGTATAGTTTCTAATGGGAGGGAC
ATGAGCTGCCATTTCTTGCTCTATTGGGCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_21932 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None