barSeed - Barley Seed Development Database

Probe CUST_39896_PI390587928

Source Contig U35_21938

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39896_PI390587928	Hv_44K_v2	TGTGGTTGTTTCTGGTCTTCTTCAACATGAGTCGAAAATTTCAGTTCTTCATTTCAGCAT	1071	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.679	1.079	1.094	0.744	0.336	0.303
Raw	429.980	407.147	386.193	398.174	65.969	63.735

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248292.1	2766	2e-24	1851 - 1910	100	60 / 60	plus	ABC16317
MLOC	MLOC_71872.1	1708	2e-24	935 - 994	100	60 / 60	minus	ABC16317
JLOC1	JLOC1_47786.1	1663	8e-25	678 - 737	100	60 / 60	plus
Harvest21	ABC16520	1131	3e-25	1072 - 1131	100	60 / 60	plus
Harvest35	U35_21938	1131	3e-25	1072 - 1131	100	60 / 60	plus

Contig Sequence (1131 bp)

>U35_21938 1131 Hv_44K_v2
GCAGAAACTAAGGATGATTTCCATATGTTCATGCGGCTTTTCAAGGAGCAACATCTTTCA
TCAACTACATTGGAGAAATCAGAGACCTTATGTTATGTCTGAGGAGGCCTGCATAAAACC
AGGTGACAGTATGGGATTGTGCACCTTGCTTGTGTCTGGATATCTGCGGGCCCACAATCT
TTCAGTGAATCAGCTTGTACATGTGTCAGGTGCTGGTGATTTTCAGTTAGGACAGATTGA
TATCCTCAAGGATCCATGTCCTGTTAGTGAGAGGAAAAACTCCGATGTAATGGATTCAGA
TGATAATCAAATTCAGATTATTGATACCTTCGTTCCAGACCCCTTGAATCAGGAACCATT
ACTTGTTGAAAATATTCCAGATCCTCTTGCAGGAGAGCAGACTTGGCCAACAGAAGCTGA
GATGGAGGAAGCCTATGAAAGCAATAAACAAAGAAGGGTTGTAAAGAGGAAACTTCCTCG
CGGCACATCAGAATACCAGGCTGCTTGGATTGTTGATGATACAGATGGTGAAGGTGATGA
TTCTGAGAATGACAATCCAGATGGTGCTGGAATGGTAATTGATGAGAAAGATCACTCAGA
GCACGACAGTGATAGTTCAGATATAGATGCAGTGTCTCACTTCACAGAGAAATTTGATCA
AGAAACTATTGGGGGTACCGAGATGGGAGATGATGAAAATCTTACCAAAGAGCAGATAGA
GGAAGACATTAAGAGAATCAAAGAATCTAATGCTGATGATGAAGAATTTCCTGATGAGGT
GGAGACACCCTTAGATGTCCCGGCAAGAAAACGTTTTGCAAAATACAGAGGACTAAAATC
ATTTAGGACATCATCCTGGGATCCTAAGGAATCTTTGCCACCTGAATATGCAAGAATATT
TGCATTCGATAAGTTTACACGAACACAAAAGCATGTGCTTGCTAAAAGGGCCGAGCTAGA
TGAAGAAAGCTCAAAGGATTGTGCTCGAATAGGATCATACGTAATGCTTCACGTGAAAAA
TGTTCCTACAGATGTTGCCTCCAAACTTTGTCATCCATCAAGAAAATTACCTGTGGTTGT
TTCTGGTCTTCTTCAACATGAGTCGAAAATTTCAGTTCTTCATTTCAGCAT

Homology of Contig U35_21938 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g19250.1	786	0.0	protein\|AARP2CN domain containing protein, expressed
Brachypodium v1_2	Bradi1g41930.1	786	0.0
Arabidopsis v10	AT1G42440.1	793	6e-132	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948), Protein of unknown function DUF663 (InterPro:IPR007034); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G06720.1); Has 2741 Blast hits to 2088 proteins in 291 species: Archae - 2; Bacteria - 131; Metazoa - 833; Fungi - 650; Plants - 171; Viruses - 49; Other Eukaryotes - 905 (source: NCBI BLink). \| chr1:15895528-15899939 REVERSE LENGTH=793