barSeed - Barley Seed Development Database

Probe CUST_39894_PI390587928

Source Contig U35_19621

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39894_PI390587928	Hv_44K_v2	TTTGTGGCGTGCGGATACTGCTTTTCGCGAACCATGTAAAGCTGTGTTTTTCAAAGGAGA	966	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.249	1.995	1.195	0.687	0.222	0.255
Raw	1006.832	1404.461	744.761	666.264	76.513	95.008

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC50785	551	3e-25	8 - 67	100	60 / 60	minus
Harvest35	U35_19621	1033	3e-25	967 - 1026	100	60 / 60	plus

Contig Sequence (1033 bp)

>U35_19621 1033 Hv_44K_v2
GGGAGATCGACAAGGTGCACTGGGAAATTATATTCAATGCGGCAATTGGAATAAAGCTCA
TACTATTTTCATGACATCTGTTGCTCATTCTTTGTTTCTGTCATCAAAACATCAAGAAAT
CTTTGACATTACAAGCGCTTTGGAGAATCACAGATCTGAAATTGCTGACTGGGATGTTGG
GGCTGGAATATACATAGATTATTTCGTTATAAAAAACTCTATGCAAGAAGAAAGTACTAT
GGACGATGATTCAGACACACTTGAGGGGAAAAATGAATTGTGCAAGAGTTTCTTTGATCG
ATTAAATGAGTCGCTGAGTATCTGGGGAAGCAAATTACCCATTGAGGCAAGGGCATGCTT
CTCGAAGATGGCAGAGGAGCTCTGTGAGCTTCTAATGAGCTTCCCCGGCGATGGCTCGAC
GCCAGATCTCTTCATGGGCTGCTTCCAGACGATGCTTGATGCCCCTGTCCCCGATGACCA
CAGGGCGTCCTACCTGCAGGAGGCAGTCTCTGTTTTCACCAACATACTTTGCGAGTACTC
ATCCTAGTCCTATGGGACTCATGGCATAGTTCCTACGGATGATCCATGACATAGTTCCTA
TGGTGCTCAAGTCAGTCACGGAATCCGGGTTGCGCAAGAGCTCTGAATTGGCACACCACG
CATTTGGAACAAGTTACAGAGATTCCCATGTCTGAAGCTGAGGGAAATGTAGAACATTGC
CATGGTCGGTGCAGACAATTGCCCACCCCTGCAAACGCATGAGGAAACCTGACGATATTT
TTCTGCACGCGTGCCACTTTTCTTGTAACCCGTGTGCCGCACCCATTCGGGCATCGTCTT
TTTTGTTATTATTGTTACGTAGAACAATAACTCATGTAGGGTTGTAGTAGAGTGTTTGTG
TGTGTTGAAATGCCAAAGAGTCGGTTGTAGATTTATCGCAGGCAATACGTAGGCTGATCT
TGTTGTTTTGTGGCGTGCGGATACTGCTTTTCGCGAACCATGTAAAGCTGTGTTTTTCAA
AGGAGAGCGACGA

Homology of Contig U35_19621 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g07580.1	1006	1e-90	protein\|OsNucAP1 - Putative Nucleoporin Autopeptidase homologue, expressed
Brachypodium v1_2	Bradi1g73110.1	1008	7e-95
Arabidopsis v10	AT1G80680.1	1046	2e-54	\| Symbols: SAR3, MOS3, PRE, NUP96 \| SUPPRESSOR OF AUXIN RESISTANCE 3 \| chr1:30324219-30328489 FORWARD LENGTH=1046