barSeed - Barley Seed Development Database

Probe CUST_39890_PI390587928

Source Contig U35_19625

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39890_PI390587928	Hv_44K_v2	CACTTCATTCAGAGATTGATTGTTAGAGTTGCATCCTTGAAAATTGTTTCACACACTTTG	1109	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20377.4	2297	2e-24	2170 - 2229	100	60 / 60	plus	ABC15306
MLOC	MLOC_20377.5	2159	2e-24	2084 - 2143	100	60 / 60	plus	ABC15306
MLOC	MLOC_20377.3	3290	2e-24	3109 - 3168	100	60 / 60	plus	ABC15306
JLOC1	JLOC1_14116.6	3687	8e-25	3486 - 3545	100	60 / 60	plus
JLOC1	JLOC1_14116.5	2649	8e-25	2448 - 2507	100	60 / 60	plus
JLOC1	JLOC1_14116.4	3273	8e-25	3072 - 3131	100	60 / 60	plus
JLOC1	JLOC1_14116.3	3303	8e-25	3102 - 3161	100	60 / 60	plus
JLOC1	JLOC1_14116.2	2679	8e-25	2478 - 2537	100	60 / 60	plus
JLOC1	JLOC1_14116.1	3657	8e-25	3456 - 3515	100	60 / 60	plus
Harvest21	ABC15306	1253	3e-25	1110 - 1169	100	60 / 60	plus	ABC15306
Harvest35	U35_19625	1264	3e-25	1110 - 1169	100	60 / 60	plus

Contig Sequence (1264 bp)

>U35_19625 1264 Hv_44K_v2
GCACGAGGCTTGTTTGAAATTGCCACCCAGCTTCCCTGTAAATTCTGGGAAGTTATCTAG
TGCTCGATGTCTACTTTTAGGTGCTGGAACTCTTGGGTGTGATGTTGCTCGTATTCTTAT
GGATTATGGTGTTCGGAATCTAACAATTGTTGACAGTGGTTGTGTTGTTGTGTCAAATTT
GGCAAGACAATCACTTTACACAAATATAGACCGCAAGACCCCAAAAGCAATATCAATACT
GGAGCATCTAAAAGAGAGATGTTCATCAGTGGAGGCTGAAGGAATTCAAATGGAAATACC
GATGCCAGGGCACCCTGTATCATCTAAAGAAGCTGCTGGTGTGCTTAAAGCTTGCGAGCG
TCTCCAGGAGTTAGTAGCTACCCATGATGCTGTCTTCTTGCTGACTGACACAAGGGAAAG
TAGGTGGCTGCCAACTCTTCTCTGTGCGAACGAAAACAAGATTGCTATTACTGCAGCCCT
AGGATATGATAGCTATCTTGCCATGCGCCATGGAGCTGGTCCAGGAACAGTTGCTGAAGG
TTCAGATATGGTTGCTGCCATGAGCAAGCTGTCTGCAGAAGATGTTCTTGGGCGTCAAAG
GCTAGGGTGCTATTTCTGCAATGACGTCATCGCTCCTGTTGATTCGGTCTCAAACAGAAC
ACTGGACCAACAGTGTACAGTAACACGACCTGGACTGGCCTCCATAGCATCTGGCCATGC
TGCGGACCTCTTCACAAGACTGTTGAATCATCCAGATGGGATACATGCTCCAGGGGATAT
CGCTGGCACGAACAGTGAGGGTCCGTCTGGTCTATTGCCACACCAGATACGAGGATCAGT
ATCGCAGTACAACTTATTAACCCTGATGGGCTATTCCTCGAGCAGCTGTATCGCATGTTC
CAATGCGGTAGTGCGTGAATACAGGAGTAGAGGATTGGATTTTGTGATGCAGGTGATCAA
TGAACCCACCTATCTGGAAGACCTGACGGGTCTGACCGAGTTGATGAAATCGGCGGATTA
TTCTCGAGTCGAGTGGGTAGATGAAGCTGACGACGACGAGGAGTTTGCCGACATGTGACT
TTATATATCGACCAAAACAGTGTAAATATCACTTCATTCAGAGATTGATTGTTAGAGTTG
CATCCTTGAAAATTGTTTCACACACTTTGTAAATTCTTCGGATATTGATTCAAACGCTTT
GTGAACACTTAAAAAAAAATAAATCCTTTGGAGATTGATTTGAGTGGAAAAAAAAAAAAA
AAAA

Homology of Contig U35_19625 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g42850.2	1042	0.0	protein\|ThiF family domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g43480.1	1033	0.0
Arabidopsis v10	AT5G45900.1	697	9e-125	\| Symbols: APG7, ATAPG7, ATG7, ATATG7 \| ThiF family protein \| chr5:18615304-18618436 FORWARD LENGTH=697