barSeed - Barley Seed Development Database

Probe CUST_39880_PI390587928

Source Contig U35_21945

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39880_PI390587928	Hv_44K_v2	GTACAGCTGTATGATAGGTTGTATGTGGCGTCAAAACCCGTCTATAGTATGTATATATAT	416	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3448.1	1548	2e-24	192 - 251	100	60 / 60	minus	ABC13047 ABC24314
JLOC1	JLOC1_2071.1	1566	8e-25	1167 - 1226	100	60 / 60	plus
Harvest21	ABC24314	632	3e-25	323 - 382	100	60 / 60	plus	ABC24314
Harvest35	U35_21945	754	3e-25	417 - 476	100	60 / 60	plus

Contig Sequence (754 bp)

>U35_21945 754 Hv_44K_v2
TTTGATTGGGAATCCTATCAAGGTTTATAATCGTGGGGGTAGCACTGGATCAATACTGGC
TACTGCAATCTGTGGAGCTCCAGCTGCTGCAGTAGCTCCAGTATCAGCTTCTGCTCGTGC
TATGCACTATGCACTTCTTGGGCTAAGGAACAGCCTTGATCCTGAACACAAGAAAGAATC
TGCGTACAAATATTCCGGGCCTTCTCAATCGTAGACTTGCAGTGCGGAGGAGGTTGGTTA
ACCATTGTCCTATTATGGAAGAAAACTGGTTGCCCGTGTTCAGTTTCATCAAATGGCAAC
ATGCAAACTTGTGCAGTGAAATGAGAATTCTGTACTGCTAGAGATCCTTAACCCGAAGAA
TCTATCAGCATCAGCTGGCCTGGTCTTTCTGGAGTTTCTAACACGTCTGTGCAGGTGTAC
AGCTGTATGATAGGTTGTATGTGGCGTCAAAACCCGTCTATAGTATGTATATATATAAAT
TAATACACAACACGGTTGTAGTCACCGCACCGTTTCCACCTCGGGTGGAAGTTTTGTAAA
CCCCTAGCTTAGGCATTGACCTAAGGTCGAGGGAGGGGATCAGGGGGGATGGCTCCAATT
TTGTACATAATTTGGTTGCTTTCTGTGTAAATAACTCTTGTTTCGGTTGCCGGTATGTTT
GCTGGCTTGCTAAACCGCCGATGATATGTTTCTCTTGCTTTGCAAGTGTATATTATTGTT
ACCAGATTTTGTGCTATAAAAAAAAAAAAAAAAA

Homology of Contig U35_21945 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None