- Probe CUST_39877_PI390587928
- Source Contig U35_7873
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_39877_PI390587928 | Hv_44K_v2 | ATGTGTTCTGTGTTGGCCAATCAGTTCGCAGTCATGTGCTCAATGTGAATGCAGAATCTG | 714 | GeneList: skyblue3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.429 | 1.091 | 1.224 | 0.624 | 0.209 | 0.235 |
| Raw | 95.674 | 105.033 | 111.703 | 86.024 | 10.397 | 13.125 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_10482.8 | 5876 | 2e-24 | 3584 - 3643 | 100 | 60 / 60 | minus | ABC10866 |
| MLOC | MLOC_10482.7 | 4079 | 2e-24 | 3610 - 3669 | 100 | 60 / 60 | minus | ABC10866 |
| MLOC | MLOC_10482.10 | 4888 | 2e-24 | 2526 - 2585 | 100 | 60 / 60 | minus | ABC10866 |
| MLOC | MLOC_10482.9 | 5468 | 2e-24 | 3106 - 3165 | 100 | 60 / 60 | minus | ABC10866 |
| MLOC | MLOC_10482.4 | 7118 | 2e-24 | 4755 - 4814 | 100 | 60 / 60 | minus | ABC10866 |
| MLOC | MLOC_10482.6 | 7135 | 2e-24 | 4843 - 4902 | 100 | 60 / 60 | minus | ABC10866 |
| MLOC | MLOC_10482.5 | 6003 | 2e-24 | 3641 - 3700 | 100 | 60 / 60 | minus | ABC10866 |
| MLOC | MLOC_10482.1 | 5953 | 2e-24 | 3667 - 3726 | 100 | 60 / 60 | minus | ABC10866 |
| JLOC1 | JLOC1_6865.5 | 5886 | 8e-25 | 2233 - 2292 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_6865.4 | 7140 | 8e-25 | 2232 - 2291 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_6865.3 | 6026 | 8e-25 | 2232 - 2291 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_6865.2 | 4120 | 8e-25 | 329 - 388 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_6865.1 | 4079 | 8e-25 | 285 - 344 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC17617 | 774 | 3e-25 | 715 - 774 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_7873 | 774 | 3e-25 | 715 - 774 | 100 | 60 / 60 | plus |
Contig Sequence (774 bp)
>U35_7873 774 Hv_44K_v2 CATACAAGAAGTCTCTGGTCAAATCAAAACTTGAAGTGTTGGCCTCGTATGCTGATGCCA AGATTGGTTTAGTGACGCATGGATGGATTACTAAAATAGAAAAGCATGGGTGCTTCGTGA GATTTTACAATGGAGTTCAGGGTTTTGTTAGCAGATCTGAACTTGGACTAGAGCCAGGTA CCAAAGCTGAAAGTGTTTATCATGTTGGACAAGTTGTCAAATGTAGAATTGTAAGCGTTG TCCCCACTTCAAGGAAACTATATGTTAGTTTTACAATGTCTTCTCATAGGGTCAGTCAAG CTGATACTGCAAAGGTGGGCACCATTGTCTCTGGTGTTGTTGAACGACTTACTCCTGCAA CTGTTGTTGTCAGTGTCAATGGCTTCTCCAAGGGATCTATACTTAATGAACAGCTGGCAG ATCATCATGGCCAAGCTGCTCAGTTGAAGAATTTGTTGAAGCCTGGCCATGAGTTCAACC AGCTTTTAGTTCTTGATACTGAAGGCCAAAATTTAGTTCTTTCCGCTAAGCACTCACTTA TCAACACCGCAAATGACATTCCATCAGAGATATCACAGATGCAAGCAGGAGCTGTAGTTC ATGGTTACATTTGCAACATCATCGAAGCTGGTTGTTTTGTTCGCTTTCTTGGACATCTAA CTGGTTTCTCTCCCAAGGATAAAGCGGTTGACAGGCCGATAGAAAAGCTTTCGGATGTGT TCTGTGTTGGCCAATCAGTTCGCAGTCATGTGCTCAATGTGAATGCAGAATCTG
Homology of Contig U35_7873 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi1g38227.1 | 1885 | 2e-120 | |
| Arabidopsis v10 | AT3G11964.1 | 1896 | 4e-85 | RNA binding;RNA binding | chr3:3793957-3806626 REVERSE LENGTH=1896 |